Strain Fitness in Shewanella oneidensis MR-1 around SO1229

Experiment: 5-Hydroxymethylfurfural 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 15 mM
1,275,967	-		SO1227	0.79	-0.1
1,276,092	-				-1.5
1,276,219	+				+0.6
1,276,230	+				+0.1
1,276,322	-	torR	SO1228	0.13	-0.7
1,276,447	-	torR	SO1228	0.31	-0.6
1,276,527	+	torR	SO1228	0.42	-0.1
1,276,562	-	torR	SO1228	0.47	-0.4
1,276,570	-	torR	SO1228	0.48	-0.4
1,276,618	+	torR	SO1228	0.55	-0.1
1,276,626	-	torR	SO1228	0.56	-0.1
1,276,633	-	torR	SO1228	0.57	-0.2
1,276,652	+	torR	SO1228	0.60	-0.0
1,276,733	-	torR	SO1228	0.71	+0.6
1,276,902	-				+0.1
1,276,945	+				+0.3
1,276,945	+				-0.4
1,276,953	-				+1.8
1,276,953	-				-1.7
1,276,999	-				-2.9
1,277,123	+	torT	SO1229	0.17	-0.5
1,277,168	-	torT	SO1229	0.22	+0.0
1,277,239	-	torT	SO1229	0.28	+0.6
1,277,269	-	torT	SO1229	0.31	-0.4
1,277,276	+	torT	SO1229	0.32	+0.1
1,277,279	-	torT	SO1229	0.32	+0.1
1,277,310	+	torT	SO1229	0.35	+1.3
1,277,364	+	torT	SO1229	0.40	+0.5
1,277,367	-	torT	SO1229	0.40	-0.5
1,277,443	+	torT	SO1229	0.47	+0.1
1,277,476	+	torT	SO1229	0.50	+0.1
1,277,484	-	torT	SO1229	0.51	+1.0
1,277,558	-	torT	SO1229	0.58	+0.4
1,277,566	+	torT	SO1229	0.58	+0.6
1,277,681	-	torT	SO1229	0.69	+0.8
1,277,996	-				-0.4
1,278,016	+				-0.4
1,278,095	-				+0.8
1,278,135	+				-0.8
1,278,150	-				-0.2
1,278,189	+				+0.0
1,278,189	+				+0.5
1,278,257	+				+0.4
1,278,277	+				-0.3
1,278,304	+				+0.9
1,278,304	+				+0.1
1,278,304	+				+1.5
1,278,304	+				-0.3
1,278,304	+				+0.3
1,278,481	+	torS	SO1230	0.13	-0.6
1,278,551	+	torS	SO1230	0.15	-0.1
1,278,574	-	torS	SO1230	0.16	-0.2
1,278,604	+	torS	SO1230	0.17	+0.3
1,278,660	-	torS	SO1230	0.19	-0.6
1,278,674	+	torS	SO1230	0.19	-0.5
1,278,970	+	torS	SO1230	0.29	-1.7
1,278,970	+	torS	SO1230	0.29	+0.2
1,278,999	+	torS	SO1230	0.30	-0.3
1,278,999	+	torS	SO1230	0.30	-1.2
1,278,999	+	torS	SO1230	0.30	-0.6
1,278,999	+	torS	SO1230	0.30	+0.2
1,279,007	-	torS	SO1230	0.30	+0.2