Experiment: 5-Hydroxymethylfurfural 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napA and napD overlap by 4 nucleotides napD and SO0850 are separated by 509 nucleotides
SO0848: napA - periplasmic nitrate reductase (NCBI ptt file), at 869,029 to 871,509
napA
SO0849: napD - napD protein (NCBI ptt file), at 871,506 to 871,790
napD
SO0850: SO0850 - hypothetical protein (NCBI ptt file), at 872,300 to 873,928
SO0850
Position (kb) 871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 870.526 kb on - strand, within napA at 870.665 kb on + strand, within napA at 870.687 kb on - strand, within napA at 870.687 kb on - strand, within napA at 870.814 kb on + strand, within napA at 870.883 kb on - strand, within napA at 870.938 kb on - strand, within napA at 870.961 kb on - strand, within napA at 870.971 kb on + strand, within napA at 871.047 kb on - strand, within napA at 871.065 kb on + strand, within napA at 871.073 kb on - strand, within napA at 871.090 kb on + strand, within napA at 871.263 kb on + strand at 871.263 kb on + strand at 871.280 kb on - strand at 871.295 kb on - strand at 871.332 kb on + strand at 871.359 kb on - strand at 871.381 kb on - strand at 871.409 kb on - strand at 871.519 kb on - strand at 871.519 kb on - strand at 871.662 kb on - strand, within napD at 871.728 kb on - strand, within napD at 871.738 kb on - strand, within napD at 871.745 kb on - strand, within napD at 871.867 kb on + strand at 871.875 kb on - strand at 872.039 kb on - strand at 872.039 kb on - strand at 872.039 kb on - strand at 872.348 kb on + strand at 872.348 kb on + strand at 872.356 kb on - strand at 872.356 kb on - strand at 872.431 kb on - strand at 872.454 kb on + strand at 872.518 kb on + strand, within SO0850 at 872.634 kb on - strand, within SO0850 at 872.669 kb on - strand, within SO0850 at 872.673 kb on + strand, within SO0850 at 872.674 kb on + strand, within SO0850 at 872.681 kb on - strand, within SO0850 at 872.681 kb on - strand, within SO0850 at 872.724 kb on - strand, within SO0850 at 872.724 kb on - strand, within SO0850 at 872.725 kb on - strand, within SO0850 at 872.767 kb on + strand, within SO0850
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM remove 870,526 - napA SO0848 0.60 -0.7 870,665 + napA SO0848 0.66 -0.6 870,687 - napA SO0848 0.67 +0.4 870,687 - napA SO0848 0.67 -0.6 870,814 + napA SO0848 0.72 -0.3 870,883 - napA SO0848 0.75 +0.6 870,938 - napA SO0848 0.77 -0.0 870,961 - napA SO0848 0.78 -0.3 870,971 + napA SO0848 0.78 -0.5 871,047 - napA SO0848 0.81 +0.4 871,065 + napA SO0848 0.82 -0.5 871,073 - napA SO0848 0.82 +0.9 871,090 + napA SO0848 0.83 +0.2 871,263 + +1.2 871,263 + +0.9 871,280 - +0.1 871,295 - -0.4 871,332 + +0.9 871,359 - -0.6 871,381 - +0.4 871,409 - +0.0 871,519 - -0.5 871,519 - +1.8 871,662 - napD SO0849 0.55 +0.7 871,728 - napD SO0849 0.78 +0.3 871,738 - napD SO0849 0.81 +0.9 871,745 - napD SO0849 0.84 +0.4 871,867 + -0.6 871,875 - +0.9 872,039 - -0.1 872,039 - -0.2 872,039 - -2.1 872,348 + +0.7 872,348 + -0.8 872,356 - +0.4 872,356 - +0.5 872,431 - +2.5 872,454 + +0.3 872,518 + SO0850 0.13 +0.2 872,634 - SO0850 0.21 +0.1 872,669 - SO0850 0.23 +1.9 872,673 + SO0850 0.23 +0.5 872,674 + SO0850 0.23 -0.3 872,681 - SO0850 0.23 -0.1 872,681 - SO0850 0.23 +2.5 872,724 - SO0850 0.26 -0.8 872,724 - SO0850 0.26 -0.1 872,725 - SO0850 0.26 -0.5 872,767 + SO0850 0.29 -3.2
Or see this region's nucleotide sequence