Experiment: 5-Hydroxymethylfurfural 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mrcB and ppiC-1 are separated by 77 nucleotides ppiC-1 and SO0636 are separated by 97 nucleotides SO0636 and SO0637 overlap by 4 nucleotides SO0637 and SO0638 are separated by 27 nucleotides SO0638 and SO0639 are separated by 188 nucleotides
SO0633: mrcB - penicillin-binding protein 1B (NCBI ptt file), at 660,661 to 662,967
mrcB
SO0635: ppiC-1 - peptidyl-prolyl cis-trans isomerase C (NCBI ptt file), at 663,045 to 663,323
ppiC-1
SO0636: SO0636 - acetyltransferase, GNAT family (NCBI ptt file), at 663,421 to 663,915
SO0636
SO0637: SO0637 - conserved hypothetical protein (NCBI ptt file), at 663,912 to 664,187
SO0637
SO0638: SO0638 - hypothetical protein (NCBI ptt file), at 664,215 to 664,415
SO0638
SO0639: SO0639 - Collagenase family (NCBI ptt file), at 664,604 to 667,717
SO0639
Position (kb) 663
664
665 Strain fitness (log2 ratio) -1
0
1 at 663.090 kb on - strand, within ppiC-1 at 663.200 kb on + strand, within ppiC-1 at 663.432 kb on - strand at 663.475 kb on + strand, within SO0636 at 663.485 kb on - strand, within SO0636 at 663.519 kb on - strand, within SO0636 at 663.588 kb on + strand, within SO0636 at 663.732 kb on + strand, within SO0636 at 663.930 kb on + strand at 664.114 kb on + strand, within SO0637 at 664.265 kb on + strand, within SO0638 at 664.293 kb on + strand, within SO0638 at 664.352 kb on + strand, within SO0638 at 664.393 kb on - strand, within SO0638 at 664.506 kb on + strand at 664.506 kb on + strand at 664.506 kb on + strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.624 kb on + strand at 664.630 kb on + strand at 664.633 kb on - strand at 664.645 kb on - strand at 664.705 kb on + strand at 664.768 kb on - strand at 664.779 kb on - strand at 664.794 kb on - strand at 664.876 kb on + strand at 664.878 kb on + strand at 664.897 kb on + strand at 664.897 kb on + strand at 664.904 kb on + strand at 664.978 kb on + strand, within SO0639 at 664.987 kb on - strand, within SO0639 at 665.025 kb on - strand, within SO0639 at 665.082 kb on - strand, within SO0639 at 665.095 kb on - strand, within SO0639 at 665.106 kb on - strand, within SO0639 at 665.107 kb on - strand, within SO0639
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM remove 663,090 - ppiC-1 SO0635 0.16 +0.1 663,200 + ppiC-1 SO0635 0.56 -0.5 663,432 - +0.7 663,475 + SO0636 0.11 -0.0 663,485 - SO0636 0.13 +1.0 663,519 - SO0636 0.20 -0.2 663,588 + SO0636 0.34 -0.4 663,732 + SO0636 0.63 +0.3 663,930 + +0.2 664,114 + SO0637 0.73 +0.6 664,265 + SO0638 0.25 +0.6 664,293 + SO0638 0.39 +0.4 664,352 + SO0638 0.68 -0.8 664,393 - SO0638 0.89 -0.4 664,506 + +0.1 664,506 + -0.2 664,506 + +0.4 664,514 - +0.4 664,514 - +0.2 664,514 - +0.5 664,514 - -0.3 664,514 - -0.0 664,514 - -1.2 664,514 - -0.3 664,514 - +0.1 664,514 - -0.6 664,624 + -0.0 664,630 + +1.7 664,633 - -0.6 664,645 - -0.9 664,705 + +1.2 664,768 - +0.6 664,779 - -0.3 664,794 - +0.5 664,876 + +0.2 664,878 + +0.4 664,897 + -0.5 664,897 + +0.5 664,904 + +0.7 664,978 + SO0639 0.12 -0.4 664,987 - SO0639 0.12 -0.0 665,025 - SO0639 0.14 -0.7 665,082 - SO0639 0.15 -1.2 665,095 - SO0639 0.16 +0.4 665,106 - SO0639 0.16 -0.7 665,107 - SO0639 0.16 -0.1
Or see this region's nucleotide sequence