Experiment: 5-Hydroxymethylfurfural 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0579 and SO0581 are separated by 240 nucleotides SO0581 and tpm are separated by 107 nucleotides tpm and bfd are separated by 223 nucleotides
SO0579: SO0579 - serine/threonine protein kinase, putative (NCBI ptt file), at 605,524 to 607,332
SO0579
SO0581: SO0581 - hypothetical protein (NCBI ptt file), at 607,573 to 607,911
SO0581
SO0582: tpm - thiopurine S-methyltransferase (NCBI ptt file), at 608,019 to 608,675
tpm
SO0583: bfd - bacterioferritin-associated ferredoxin (NCBI ptt file), at 608,899 to 609,090
bfd
Position (kb) 607
608 Strain fitness (log2 ratio) -2
-1
0
1 at 606.573 kb on - strand, within SO0579 at 606.585 kb on - strand, within SO0579 at 606.633 kb on - strand, within SO0579 at 606.656 kb on - strand, within SO0579 at 606.677 kb on - strand, within SO0579 at 606.737 kb on + strand, within SO0579 at 606.745 kb on - strand, within SO0579 at 606.767 kb on - strand, within SO0579 at 606.767 kb on - strand, within SO0579 at 606.775 kb on + strand, within SO0579 at 606.798 kb on - strand, within SO0579 at 606.847 kb on + strand, within SO0579 at 606.853 kb on + strand, within SO0579 at 606.855 kb on - strand, within SO0579 at 606.861 kb on - strand, within SO0579 at 606.905 kb on + strand, within SO0579 at 606.922 kb on + strand, within SO0579 at 606.946 kb on + strand, within SO0579 at 606.973 kb on - strand, within SO0579 at 607.023 kb on + strand, within SO0579 at 607.023 kb on + strand, within SO0579 at 607.064 kb on - strand, within SO0579 at 607.064 kb on - strand, within SO0579 at 607.065 kb on - strand, within SO0579 at 607.221 kb on - strand at 607.237 kb on + strand at 607.244 kb on + strand at 607.245 kb on - strand at 607.510 kb on - strand at 607.565 kb on - strand at 607.569 kb on + strand at 607.569 kb on + strand at 607.577 kb on - strand at 607.580 kb on + strand at 607.590 kb on + strand at 607.707 kb on + strand, within SO0581 at 607.715 kb on + strand, within SO0581 at 607.722 kb on - strand, within SO0581 at 607.804 kb on + strand, within SO0581 at 607.874 kb on - strand, within SO0581 at 607.882 kb on - strand at 607.905 kb on + strand at 607.939 kb on + strand at 608.089 kb on - strand, within tpm at 608.089 kb on - strand, within tpm at 608.187 kb on + strand, within tpm at 608.194 kb on + strand, within tpm at 608.262 kb on - strand, within tpm at 608.302 kb on + strand, within tpm at 608.359 kb on + strand, within tpm at 608.359 kb on + strand, within tpm at 608.359 kb on + strand, within tpm at 608.359 kb on + strand, within tpm at 608.367 kb on - strand, within tpm at 608.436 kb on - strand, within tpm at 608.464 kb on + strand, within tpm at 608.464 kb on + strand, within tpm at 608.472 kb on - strand, within tpm at 608.472 kb on - strand, within tpm at 608.509 kb on - strand, within tpm at 608.576 kb on + strand, within tpm at 608.642 kb on + strand at 608.776 kb on + strand at 608.833 kb on + strand at 608.833 kb on + strand at 608.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM remove 606,573 - SO0579 0.58 -0.4 606,585 - SO0579 0.59 +0.5 606,633 - SO0579 0.61 -0.5 606,656 - SO0579 0.63 -0.4 606,677 - SO0579 0.64 +0.4 606,737 + SO0579 0.67 -0.0 606,745 - SO0579 0.67 -0.1 606,767 - SO0579 0.69 -0.0 606,767 - SO0579 0.69 +0.3 606,775 + SO0579 0.69 -0.1 606,798 - SO0579 0.70 +0.5 606,847 + SO0579 0.73 +0.1 606,853 + SO0579 0.73 +0.1 606,855 - SO0579 0.74 +0.4 606,861 - SO0579 0.74 -0.5 606,905 + SO0579 0.76 +1.2 606,922 + SO0579 0.77 +0.2 606,946 + SO0579 0.79 -0.3 606,973 - SO0579 0.80 -0.3 607,023 + SO0579 0.83 +1.3 607,023 + SO0579 0.83 -1.8 607,064 - SO0579 0.85 -0.1 607,064 - SO0579 0.85 +0.2 607,065 - SO0579 0.85 -0.2 607,221 - -0.0 607,237 + -0.3 607,244 + +1.2 607,245 - -0.0 607,510 - +0.3 607,565 - -0.2 607,569 + +0.4 607,569 + -0.7 607,577 - +0.2 607,580 + +0.8 607,590 + -0.2 607,707 + SO0581 0.40 +0.1 607,715 + SO0581 0.42 +0.7 607,722 - SO0581 0.44 -0.2 607,804 + SO0581 0.68 -0.1 607,874 - SO0581 0.89 -1.5 607,882 - -0.7 607,905 + -0.4 607,939 + +0.3 608,089 - tpm SO0582 0.11 +0.4 608,089 - tpm SO0582 0.11 -0.0 608,187 + tpm SO0582 0.26 +0.3 608,194 + tpm SO0582 0.27 -0.4 608,262 - tpm SO0582 0.37 +1.5 608,302 + tpm SO0582 0.43 +1.6 608,359 + tpm SO0582 0.52 -1.4 608,359 + tpm SO0582 0.52 -0.2 608,359 + tpm SO0582 0.52 -2.3 608,359 + tpm SO0582 0.52 +1.0 608,367 - tpm SO0582 0.53 -0.9 608,436 - tpm SO0582 0.63 +0.6 608,464 + tpm SO0582 0.68 +1.6 608,464 + tpm SO0582 0.68 -0.8 608,472 - tpm SO0582 0.69 -0.4 608,472 - tpm SO0582 0.69 -0.1 608,509 - tpm SO0582 0.75 -0.2 608,576 + tpm SO0582 0.85 +0.2 608,642 + -0.6 608,776 + -1.0 608,833 + +1.6 608,833 + -0.3 608,874 - -0.2
Or see this region's nucleotide sequence