Strain Fitness in Shewanella oneidensis MR-1 around SO0368

Experiment: 5-Hydroxymethylfurfural 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0367 and SO0368 are separated by 439 nucleotidesSO0368 and SO0369 are separated by 11 nucleotides SO0367: SO0367 - conserved hypothetical protein (NCBI ptt file), at 378,250 to 379,365 SO0367 SO0368: SO0368 - helicase (NCBI ptt file), at 379,805 to 382,753 SO0368 SO0369: SO0369 - transcriptional regulator, LysR family (NCBI ptt file), at 382,765 to 383,652 SO0369 Position (kb) 379 380 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 378.852 kb on + strand, within SO0367at 378.887 kb on + strand, within SO0367at 378.974 kb on + strand, within SO0367at 378.987 kb on + strand, within SO0367at 378.994 kb on + strand, within SO0367at 379.107 kb on + strand, within SO0367at 379.107 kb on + strand, within SO0367at 379.107 kb on + strand, within SO0367at 379.115 kb on - strand, within SO0367at 379.176 kb on - strand, within SO0367at 379.367 kb on + strandat 379.370 kb on - strandat 379.392 kb on + strandat 379.463 kb on - strandat 379.463 kb on - strandat 379.463 kb on - strandat 379.469 kb on - strandat 379.480 kb on - strandat 379.573 kb on + strandat 379.574 kb on - strandat 379.574 kb on - strandat 379.585 kb on - strandat 379.674 kb on + strandat 379.674 kb on + strandat 379.674 kb on + strandat 379.682 kb on - strandat 379.682 kb on - strandat 379.682 kb on - strandat 379.683 kb on - strandat 379.683 kb on - strandat 379.697 kb on - strandat 379.765 kb on - strandat 379.765 kb on - strandat 379.817 kb on - strandat 379.822 kb on + strandat 379.868 kb on + strandat 379.876 kb on - strandat 379.876 kb on - strandat 379.876 kb on - strandat 379.960 kb on + strandat 379.960 kb on + strandat 379.968 kb on - strandat 379.968 kb on - strandat 380.021 kb on + strandat 380.094 kb on + strandat 380.131 kb on - strand, within SO0368at 380.137 kb on - strand, within SO0368at 380.170 kb on + strand, within SO0368at 380.294 kb on + strand, within SO0368at 380.302 kb on - strand, within SO0368at 380.335 kb on - strand, within SO0368at 380.348 kb on - strand, within SO0368at 380.352 kb on + strand, within SO0368at 380.360 kb on - strand, within SO0368at 380.443 kb on + strand, within SO0368at 380.491 kb on - strand, within SO0368at 380.508 kb on + strand, within SO0368at 380.511 kb on - strand, within SO0368at 380.513 kb on + strand, within SO0368at 380.513 kb on + strand, within SO0368at 380.516 kb on - strand, within SO0368at 380.516 kb on - strand, within SO0368at 380.521 kb on - strand, within SO0368at 380.575 kb on + strand, within SO0368at 380.575 kb on + strand, within SO0368at 380.575 kb on + strand, within SO0368at 380.583 kb on - strand, within SO0368at 380.721 kb on + strand, within SO0368at 380.735 kb on - strand, within SO0368at 380.799 kb on - strand, within SO0368at 380.848 kb on - strand, within SO0368at 380.935 kb on - strand, within SO0368at 380.948 kb on + strand, within SO0368at 380.948 kb on + strand, within SO0368at 380.956 kb on - strand, within SO0368at 380.957 kb on - strand, within SO0368at 381.002 kb on - strand, within SO0368at 381.004 kb on + strand, within SO0368at 381.012 kb on - strand, within SO0368at 381.012 kb on - strand, within SO0368at 381.012 kb on - strand, within SO0368at 381.061 kb on - strand, within SO0368at 381.081 kb on - strand, within SO0368at 381.128 kb on + strand, within SO0368at 381.178 kb on - strand, within SO0368at 381.194 kb on + strand, within SO0368at 381.206 kb on + strand, within SO0368at 381.236 kb on - strand, within SO0368at 381.248 kb on + strand, within SO0368at 381.248 kb on + strand, within SO0368at 381.256 kb on - strand, within SO0368at 381.256 kb on - strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.258 kb on + strand, within SO0368at 381.266 kb on + strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.266 kb on - strand, within SO0368at 381.274 kb on - strand, within SO0368at 381.285 kb on + strand, within SO0368at 381.293 kb on - strand, within SO0368at 381.293 kb on - strand, within SO0368at 381.339 kb on + strand, within SO0368at 381.339 kb on - strand, within SO0368at 381.344 kb on + strand, within SO0368at 381.352 kb on - strand, within SO0368at 381.390 kb on + strand, within SO0368at 381.398 kb on - strand, within SO0368at 381.398 kb on - strand, within SO0368at 381.443 kb on + strand, within SO0368at 381.453 kb on + strand, within SO0368at 381.461 kb on - strand, within SO0368at 381.461 kb on - strand, within SO0368at 381.461 kb on - strand, within SO0368at 381.553 kb on + strand, within SO0368at 381.561 kb on - strand, within SO0368at 381.691 kb on + strand, within SO0368at 381.710 kb on - strand, within SO0368at 381.754 kb on + strand, within SO0368at 381.797 kb on + strand, within SO0368at 381.814 kb on - strand, within SO0368at 381.858 kb on - strand, within SO0368at 381.896 kb on + strand, within SO0368at 381.901 kb on + strand, within SO0368at 381.915 kb on + strand, within SO0368at 381.963 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.977 kb on - strand, within SO0368at 381.977 kb on - strand, within SO0368at 381.979 kb on - strand, within SO0368at 382.013 kb on - strand, within SO0368at 382.013 kb on - strand, within SO0368at 382.071 kb on + strand, within SO0368at 382.091 kb on - strand, within SO0368at 382.097 kb on + strand, within SO0368at 382.097 kb on + strand, within SO0368at 382.097 kb on + strand, within SO0368at 382.105 kb on - strand, within SO0368at 382.105 kb on - strand, within SO0368at 382.136 kb on - strand, within SO0368at 382.137 kb on - strand, within SO0368at 382.147 kb on - strand, within SO0368at 382.148 kb on - strand, within SO0368at 382.155 kb on + strand, within SO0368at 382.155 kb on - strand, within SO0368at 382.163 kb on - strand, within SO0368at 382.183 kb on + strand, within SO0368at 382.276 kb on - strand, within SO0368at 382.289 kb on - strand, within SO0368at 382.294 kb on - strand, within SO0368at 382.298 kb on + strand, within SO0368at 382.298 kb on + strand, within SO0368at 382.298 kb on + strand, within SO0368at 382.306 kb on - strand, within SO0368at 382.306 kb on - strand, within SO0368at 382.402 kb on + strand, within SO0368at 382.452 kb on + strand, within SO0368at 382.470 kb on - strandat 382.489 kb on - strandat 382.516 kb on + strandat 382.516 kb on + strandat 382.516 kb on + strandat 382.516 kb on + strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.537 kb on + strandat 382.545 kb on - strandat 382.561 kb on + strandat 382.646 kb on + strandat 382.653 kb on - strandat 382.673 kb on - strandat 382.673 kb on - strandat 382.673 kb on - strandat 382.681 kb on - strandat 382.709 kb on - strandat 382.710 kb on - strandat 382.869 kb on + strand, within SO0369at 382.870 kb on + strand, within SO0369at 382.878 kb on - strand, within SO0369at 382.880 kb on - strand, within SO0369at 382.926 kb on - strand, within SO0369at 382.961 kb on + strand, within SO0369at 382.961 kb on + strand, within SO0369at 382.961 kb on + strand, within SO0369at 382.969 kb on - strand, within SO0369at 382.969 kb on - strand, within SO0369at 382.971 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.014 kb on - strand, within SO0369at 383.014 kb on - strand, within SO0369at 383.039 kb on - strand, within SO0369at 383.141 kb on - strand, within SO0369at 383.143 kb on + strand, within SO0369at 383.190 kb on + strand, within SO0369at 383.203 kb on - strand, within SO0369at 383.232 kb on + strand, within SO0369at 383.358 kb on + strand, within SO0369at 383.418 kb on + strand, within SO0369at 383.436 kb on - strand, within SO0369at 383.519 kb on + strand, within SO0369at 383.524 kb on + strand, within SO0369at 383.571 kb on + strandat 383.571 kb on + strandat 383.651 kb on + strandat 383.656 kb on + strandat 383.664 kb on - strandat 383.736 kb on + strandat 383.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM
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378,852 + SO0367 0.54 +0.4
378,887 + SO0367 0.57 -0.5
378,974 + SO0367 0.65 +0.1
378,987 + SO0367 0.66 +0.4
378,994 + SO0367 0.67 +1.4
379,107 + SO0367 0.77 -0.4
379,107 + SO0367 0.77 -0.4
379,107 + SO0367 0.77 +0.4
379,115 - SO0367 0.78 +0.5
379,176 - SO0367 0.83 +0.1
379,367 + -1.4
379,370 - +0.4
379,392 + -0.6
379,463 - -0.4
379,463 - +2.1
379,463 - -0.9
379,469 - -0.8
379,480 - -0.3
379,573 + -0.6
379,574 - -0.3
379,574 - +0.4
379,585 - +0.2
379,674 + +0.2
379,674 + -1.5
379,674 + -0.3
379,682 - -2.1
379,682 - -0.7
379,682 - -0.3
379,683 - +0.8
379,683 - -0.2
379,697 - -0.2
379,765 - -0.8
379,765 - -0.2
379,817 - +1.7
379,822 + -0.0
379,868 + -0.3
379,876 - +0.1
379,876 - -0.6
379,876 - +0.0
379,960 + -0.7
379,960 + +0.3
379,968 - -0.2
379,968 - -0.1
380,021 + -0.1
380,094 + -0.1
380,131 - SO0368 0.11 -0.1
380,137 - SO0368 0.11 +0.7
380,170 + SO0368 0.12 -0.6
380,294 + SO0368 0.17 -1.3
380,302 - SO0368 0.17 +0.2
380,335 - SO0368 0.18 +0.0
380,348 - SO0368 0.18 -0.6
380,352 + SO0368 0.19 +0.3
380,360 - SO0368 0.19 +0.3
380,443 + SO0368 0.22 -0.2
380,491 - SO0368 0.23 +0.2
380,508 + SO0368 0.24 -0.4
380,511 - SO0368 0.24 -0.2
380,513 + SO0368 0.24 -0.2
380,513 + SO0368 0.24 +0.3
380,516 - SO0368 0.24 +0.2
380,516 - SO0368 0.24 +0.7
380,521 - SO0368 0.24 -0.3
380,575 + SO0368 0.26 +0.1
380,575 + SO0368 0.26 -0.9
380,575 + SO0368 0.26 -0.2
380,583 - SO0368 0.26 +0.8
380,721 + SO0368 0.31 +0.2
380,735 - SO0368 0.32 -0.6
380,799 - SO0368 0.34 -0.3
380,848 - SO0368 0.35 +0.8
380,935 - SO0368 0.38 +0.6
380,948 + SO0368 0.39 -0.2
380,948 + SO0368 0.39 +0.0
380,956 - SO0368 0.39 -0.5
380,957 - SO0368 0.39 +0.3
381,002 - SO0368 0.41 +1.4
381,004 + SO0368 0.41 -0.4
381,012 - SO0368 0.41 +0.1
381,012 - SO0368 0.41 -0.5
381,012 - SO0368 0.41 -0.1
381,061 - SO0368 0.43 +0.2
381,081 - SO0368 0.43 +0.3
381,128 + SO0368 0.45 +0.5
381,178 - SO0368 0.47 +0.3
381,194 + SO0368 0.47 +0.5
381,206 + SO0368 0.48 -1.2
381,236 - SO0368 0.49 +0.0
381,248 + SO0368 0.49 +0.2
381,248 + SO0368 0.49 -0.0
381,256 - SO0368 0.49 -0.4
381,256 - SO0368 0.49 +1.0
381,258 + SO0368 0.49 +0.2
381,258 + SO0368 0.49 +0.1
381,258 + SO0368 0.49 +0.4
381,258 + SO0368 0.49 +0.0
381,258 + SO0368 0.49 +0.7
381,258 + SO0368 0.49 +0.4
381,258 + SO0368 0.49 -0.3
381,258 + SO0368 0.49 +0.3
381,258 + SO0368 0.49 -2.1
381,258 + SO0368 0.49 +1.4
381,258 + SO0368 0.49 +0.3
381,258 + SO0368 0.49 +0.4
381,258 + SO0368 0.49 -0.7
381,258 + SO0368 0.49 -0.1
381,266 + SO0368 0.50 +0.3
381,266 - SO0368 0.50 +0.3
381,266 - SO0368 0.50 +0.4
381,266 - SO0368 0.50 -0.0
381,266 - SO0368 0.50 -0.6
381,266 - SO0368 0.50 +0.1
381,266 - SO0368 0.50 +0.6
381,266 - SO0368 0.50 -0.6
381,266 - SO0368 0.50 +0.2
381,266 - SO0368 0.50 +0.8
381,266 - SO0368 0.50 +0.1
381,266 - SO0368 0.50 +1.0
381,274 - SO0368 0.50 +0.2
381,285 + SO0368 0.50 -0.1
381,293 - SO0368 0.50 +0.3
381,293 - SO0368 0.50 -1.2
381,339 + SO0368 0.52 +2.0
381,339 - SO0368 0.52 -0.2
381,344 + SO0368 0.52 +0.4
381,352 - SO0368 0.52 +0.5
381,390 + SO0368 0.54 -0.0
381,398 - SO0368 0.54 +0.5
381,398 - SO0368 0.54 +1.9
381,443 + SO0368 0.56 -0.9
381,453 + SO0368 0.56 +0.1
381,461 - SO0368 0.56 +1.4
381,461 - SO0368 0.56 -0.3
381,461 - SO0368 0.56 -2.4
381,553 + SO0368 0.59 +0.4
381,561 - SO0368 0.60 +0.1
381,691 + SO0368 0.64 -1.4
381,710 - SO0368 0.65 +0.6
381,754 + SO0368 0.66 -0.1
381,797 + SO0368 0.68 +3.4
381,814 - SO0368 0.68 -0.9
381,858 - SO0368 0.70 -0.7
381,896 + SO0368 0.71 +1.4
381,901 + SO0368 0.71 +0.1
381,915 + SO0368 0.72 +1.1
381,963 - SO0368 0.73 -0.1
381,967 - SO0368 0.73 -0.7
381,967 - SO0368 0.73 -0.1
381,967 - SO0368 0.73 +0.3
381,967 - SO0368 0.73 +0.1
381,977 - SO0368 0.74 +0.3
381,977 - SO0368 0.74 +0.8
381,979 - SO0368 0.74 -2.8
382,013 - SO0368 0.75 -1.9
382,013 - SO0368 0.75 -0.3
382,071 + SO0368 0.77 -0.1
382,091 - SO0368 0.78 -1.0
382,097 + SO0368 0.78 +0.1
382,097 + SO0368 0.78 +0.3
382,097 + SO0368 0.78 -0.8
382,105 - SO0368 0.78 +1.0
382,105 - SO0368 0.78 -2.5
382,136 - SO0368 0.79 +0.0
382,137 - SO0368 0.79 +0.3
382,147 - SO0368 0.79 +0.2
382,148 - SO0368 0.79 -0.5
382,155 + SO0368 0.80 -0.2
382,155 - SO0368 0.80 -0.2
382,163 - SO0368 0.80 -1.0
382,183 + SO0368 0.81 +1.0
382,276 - SO0368 0.84 -0.4
382,289 - SO0368 0.84 +0.3
382,294 - SO0368 0.84 +1.8
382,298 + SO0368 0.85 +1.5
382,298 + SO0368 0.85 -0.1
382,298 + SO0368 0.85 -0.6
382,306 - SO0368 0.85 +0.1
382,306 - SO0368 0.85 +1.0
382,402 + SO0368 0.88 -0.9
382,452 + SO0368 0.90 -0.6
382,470 - -0.2
382,489 - -0.1
382,516 + -0.0
382,516 + -0.0
382,516 + +0.6
382,516 + -0.9
382,524 - +0.1
382,524 - -0.5
382,524 - -0.2
382,524 - -0.4
382,524 - -0.4
382,524 - +0.4
382,524 - +0.1
382,537 + -1.2
382,545 - +0.4
382,561 + -0.1
382,646 + -0.1
382,653 - +0.5
382,673 - +1.1
382,673 - -0.4
382,673 - +0.2
382,681 - +0.1
382,709 - -1.1
382,710 - +1.1
382,869 + SO0369 0.12 +0.2
382,870 + SO0369 0.12 +0.2
382,878 - SO0369 0.13 +0.0
382,880 - SO0369 0.13 +0.5
382,926 - SO0369 0.18 -0.0
382,961 + SO0369 0.22 -0.2
382,961 + SO0369 0.22 -0.2
382,961 + SO0369 0.22 +0.5
382,969 - SO0369 0.23 -0.2
382,969 - SO0369 0.23 +0.0
382,971 + SO0369 0.23 +0.6
383,006 + SO0369 0.27 +0.0
383,006 + SO0369 0.27 -0.0
383,006 + SO0369 0.27 -0.7
383,006 + SO0369 0.27 +1.1
383,006 + SO0369 0.27 -0.3
383,014 - SO0369 0.28 -0.0
383,014 - SO0369 0.28 -0.0
383,039 - SO0369 0.31 +1.1
383,141 - SO0369 0.42 -0.1
383,143 + SO0369 0.43 +0.2
383,190 + SO0369 0.48 -0.7
383,203 - SO0369 0.49 +0.3
383,232 + SO0369 0.53 -0.5
383,358 + SO0369 0.67 -1.6
383,418 + SO0369 0.74 +0.5
383,436 - SO0369 0.76 +0.3
383,519 + SO0369 0.85 -0.1
383,524 + SO0369 0.85 -0.9
383,571 + +0.8
383,571 + +0.1
383,651 + -0.0
383,656 + +0.4
383,664 - +0.2
383,736 + +0.0
383,744 - -0.3

Or see this region's nucleotide sequence