Experiment: 5-Hydroxymethylfurfural 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0151 and SO0152 are separated by 25 nucleotides SO0152 and SO0154 are separated by 241 nucleotides
SO0151: SO0151 - hypothetical SAM-dependent methyltransferase (NCBI ptt file), at 159,448 to 160,215
SO0151
SO0152: SO0152 - hypothetical carboxypeptidase (NCBI ptt file), at 160,241 to 162,124
SO0152
SO0154: SO0154 - conserved hypothetical protein (NCBI ptt file), at 162,366 to 163,490
SO0154
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -1
0
1
2
3 at 159.382 kb on + strand at 159.405 kb on + strand at 159.408 kb on - strand at 159.428 kb on - strand at 159.499 kb on + strand at 159.531 kb on - strand, within SO0151 at 159.726 kb on + strand, within SO0151 at 159.811 kb on + strand, within SO0151 at 159.830 kb on + strand, within SO0151 at 159.863 kb on + strand, within SO0151 at 159.880 kb on + strand, within SO0151 at 159.882 kb on + strand, within SO0151 at 159.890 kb on - strand, within SO0151 at 159.890 kb on - strand, within SO0151 at 159.972 kb on + strand, within SO0151 at 160.014 kb on - strand, within SO0151 at 160.015 kb on - strand, within SO0151 at 160.015 kb on - strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.071 kb on - strand, within SO0151 at 160.071 kb on - strand, within SO0151 at 160.110 kb on - strand, within SO0151 at 160.129 kb on - strand, within SO0151 at 160.129 kb on - strand, within SO0151 at 160.173 kb on + strand at 160.198 kb on - strand at 160.200 kb on + strand at 160.200 kb on + strand at 160.208 kb on - strand at 160.247 kb on - strand at 160.259 kb on - strand at 160.290 kb on + strand at 160.298 kb on - strand at 160.300 kb on + strand at 160.308 kb on - strand at 160.308 kb on - strand at 160.340 kb on - strand at 160.349 kb on + strand at 160.386 kb on - strand at 160.427 kb on + strand at 160.435 kb on - strand, within SO0152 at 160.448 kb on + strand, within SO0152 at 160.456 kb on - strand, within SO0152 at 160.456 kb on - strand, within SO0152 at 160.467 kb on - strand, within SO0152 at 160.526 kb on + strand, within SO0152 at 160.527 kb on + strand, within SO0152 at 160.534 kb on - strand, within SO0152 at 160.542 kb on + strand, within SO0152 at 160.550 kb on - strand, within SO0152 at 160.573 kb on - strand, within SO0152 at 160.601 kb on + strand, within SO0152 at 160.643 kb on - strand, within SO0152 at 160.643 kb on - strand, within SO0152 at 160.657 kb on + strand, within SO0152 at 160.665 kb on - strand, within SO0152 at 160.691 kb on + strand, within SO0152 at 160.691 kb on + strand, within SO0152 at 160.783 kb on + strand, within SO0152 at 160.824 kb on + strand, within SO0152 at 160.831 kb on + strand, within SO0152 at 160.831 kb on + strand, within SO0152 at 160.831 kb on + strand, within SO0152 at 160.831 kb on + strand, within SO0152 at 160.839 kb on - strand, within SO0152 at 160.839 kb on - strand, within SO0152 at 160.839 kb on - strand, within SO0152 at 160.882 kb on + strand, within SO0152 at 160.911 kb on + strand, within SO0152 at 160.917 kb on + strand, within SO0152 at 160.925 kb on - strand, within SO0152 at 160.970 kb on + strand, within SO0152 at 161.042 kb on - strand, within SO0152 at 161.044 kb on + strand, within SO0152 at 161.077 kb on + strand, within SO0152 at 161.077 kb on + strand, within SO0152 at 161.085 kb on - strand, within SO0152 at 161.142 kb on - strand, within SO0152 at 161.166 kb on + strand, within SO0152 at 161.166 kb on + strand, within SO0152 at 161.174 kb on - strand, within SO0152 at 161.174 kb on - strand, within SO0152 at 161.174 kb on - strand, within SO0152 at 161.177 kb on + strand, within SO0152 at 161.294 kb on + strand, within SO0152 at 161.320 kb on - strand, within SO0152 at 161.357 kb on + strand, within SO0152 at 161.392 kb on + strand, within SO0152 at 161.419 kb on + strand, within SO0152 at 161.426 kb on + strand, within SO0152 at 161.427 kb on + strand, within SO0152 at 161.627 kb on + strand, within SO0152 at 161.666 kb on + strand, within SO0152 at 161.749 kb on - strand, within SO0152 at 161.765 kb on + strand, within SO0152 at 161.845 kb on + strand, within SO0152 at 161.846 kb on + strand, within SO0152 at 161.854 kb on - strand, within SO0152 at 161.881 kb on - strand, within SO0152 at 161.897 kb on + strand, within SO0152 at 161.897 kb on + strand, within SO0152 at 161.905 kb on - strand, within SO0152 at 161.912 kb on + strand, within SO0152 at 161.912 kb on + strand, within SO0152 at 161.926 kb on + strand, within SO0152 at 161.926 kb on + strand, within SO0152 at 162.005 kb on + strand at 162.053 kb on + strand at 162.061 kb on - strand at 162.061 kb on - strand at 162.061 kb on - strand at 162.122 kb on - strand at 162.171 kb on + strand at 162.343 kb on - strand at 162.452 kb on - strand at 162.488 kb on - strand, within SO0154 at 162.502 kb on - strand, within SO0154 at 162.535 kb on - strand, within SO0154 at 162.545 kb on + strand, within SO0154 at 162.566 kb on + strand, within SO0154 at 162.566 kb on + strand, within SO0154 at 162.566 kb on + strand, within SO0154 at 162.598 kb on + strand, within SO0154 at 162.659 kb on - strand, within SO0154 at 162.742 kb on + strand, within SO0154 at 162.754 kb on + strand, within SO0154 at 162.854 kb on + strand, within SO0154 at 162.945 kb on + strand, within SO0154 at 162.969 kb on - strand, within SO0154 at 162.987 kb on + strand, within SO0154 at 162.992 kb on - strand, within SO0154 at 163.089 kb on - strand, within SO0154
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM remove 159,382 + -0.9 159,405 + +0.4 159,408 - -0.1 159,428 - -0.7 159,499 + +1.0 159,531 - SO0151 0.11 +0.1 159,726 + SO0151 0.36 -0.2 159,811 + SO0151 0.47 -0.3 159,830 + SO0151 0.50 +1.2 159,863 + SO0151 0.54 -1.4 159,880 + SO0151 0.56 -0.7 159,882 + SO0151 0.57 +1.2 159,890 - SO0151 0.58 +0.3 159,890 - SO0151 0.58 -0.5 159,972 + SO0151 0.68 +0.0 160,014 - SO0151 0.74 -0.8 160,015 - SO0151 0.74 -0.5 160,015 - SO0151 0.74 +0.1 160,063 + SO0151 0.80 -0.7 160,063 + SO0151 0.80 -0.7 160,063 + SO0151 0.80 +1.0 160,063 + SO0151 0.80 +0.7 160,063 + SO0151 0.80 +0.3 160,071 - SO0151 0.81 +0.1 160,071 - SO0151 0.81 +0.7 160,110 - SO0151 0.86 +0.1 160,129 - SO0151 0.89 -0.0 160,129 - SO0151 0.89 +1.6 160,173 + +0.1 160,198 - +1.0 160,200 + -0.0 160,200 + -0.2 160,208 - +0.7 160,247 - +0.7 160,259 - +0.3 160,290 + -0.2 160,298 - +0.9 160,300 + +0.2 160,308 - -0.8 160,308 - -0.1 160,340 - -1.3 160,349 + +0.4 160,386 - -0.3 160,427 + -0.4 160,435 - SO0152 0.10 +0.1 160,448 + SO0152 0.11 -0.7 160,456 - SO0152 0.11 +0.9 160,456 - SO0152 0.11 -0.2 160,467 - SO0152 0.12 -0.2 160,526 + SO0152 0.15 -0.1 160,527 + SO0152 0.15 +0.3 160,534 - SO0152 0.16 -0.0 160,542 + SO0152 0.16 -1.0 160,550 - SO0152 0.16 +0.3 160,573 - SO0152 0.18 +0.7 160,601 + SO0152 0.19 +0.1 160,643 - SO0152 0.21 -1.1 160,643 - SO0152 0.21 -0.9 160,657 + SO0152 0.22 -0.2 160,665 - SO0152 0.23 +0.0 160,691 + SO0152 0.24 +1.0 160,691 + SO0152 0.24 -0.2 160,783 + SO0152 0.29 -1.3 160,824 + SO0152 0.31 +0.1 160,831 + SO0152 0.31 -0.0 160,831 + SO0152 0.31 -0.3 160,831 + SO0152 0.31 -0.1 160,831 + SO0152 0.31 +0.8 160,839 - SO0152 0.32 -0.4 160,839 - SO0152 0.32 +0.2 160,839 - SO0152 0.32 -0.7 160,882 + SO0152 0.34 +0.3 160,911 + SO0152 0.36 -0.3 160,917 + SO0152 0.36 +0.1 160,925 - SO0152 0.36 +0.9 160,970 + SO0152 0.39 +0.5 161,042 - SO0152 0.43 -0.6 161,044 + SO0152 0.43 +0.8 161,077 + SO0152 0.44 +0.3 161,077 + SO0152 0.44 +0.2 161,085 - SO0152 0.45 -0.5 161,142 - SO0152 0.48 -0.1 161,166 + SO0152 0.49 -0.1 161,166 + SO0152 0.49 +0.2 161,174 - SO0152 0.50 -0.4 161,174 - SO0152 0.50 -0.3 161,174 - SO0152 0.50 -0.3 161,177 + SO0152 0.50 -1.1 161,294 + SO0152 0.56 -0.1 161,320 - SO0152 0.57 +1.0 161,357 + SO0152 0.59 +1.5 161,392 + SO0152 0.61 +0.3 161,419 + SO0152 0.63 -0.1 161,426 + SO0152 0.63 +0.3 161,427 + SO0152 0.63 -0.6 161,627 + SO0152 0.74 -0.5 161,666 + SO0152 0.76 +0.5 161,749 - SO0152 0.80 -0.3 161,765 + SO0152 0.81 -0.1 161,845 + SO0152 0.85 -1.3 161,846 + SO0152 0.85 +0.2 161,854 - SO0152 0.86 +1.8 161,881 - SO0152 0.87 +0.4 161,897 + SO0152 0.88 +0.6 161,897 + SO0152 0.88 +0.6 161,905 - SO0152 0.88 +0.2 161,912 + SO0152 0.89 -0.1 161,912 + SO0152 0.89 +0.0 161,926 + SO0152 0.89 -1.4 161,926 + SO0152 0.89 -0.5 162,005 + -0.1 162,053 + -0.2 162,061 - -0.6 162,061 - -0.9 162,061 - -0.2 162,122 - -0.3 162,171 + -1.1 162,343 - +0.3 162,452 - -0.6 162,488 - SO0154 0.11 -0.2 162,502 - SO0154 0.12 -0.4 162,535 - SO0154 0.15 +0.2 162,545 + SO0154 0.16 -0.5 162,566 + SO0154 0.18 -0.7 162,566 + SO0154 0.18 -0.7 162,566 + SO0154 0.18 +0.5 162,598 + SO0154 0.21 +0.5 162,659 - SO0154 0.26 -0.4 162,742 + SO0154 0.33 +0.0 162,754 + SO0154 0.34 +2.8 162,854 + SO0154 0.43 -1.1 162,945 + SO0154 0.51 -0.1 162,969 - SO0154 0.54 -1.0 162,987 + SO0154 0.55 -0.1 162,992 - SO0154 0.56 -0.4 163,089 - SO0154 0.64 -0.8
Or see this region's nucleotide sequence