Experiment: 5-Hydroxymethylfurfural 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0047 and SO0048 are separated by 48 nucleotides SO0048 and gpmA are separated by 109 nucleotides
SO0047: SO0047 - carboxyl-terminal protease, putative (NCBI ptt file), at 53,199 to 54,407
SO0047
SO0048: SO0048 - peptidase, M23/M37 family (NCBI ptt file), at 54,456 to 55,490
SO0048
SO0049: gpmA - phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI ptt file), at 55,600 to 57,144
gpmA
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 53.758 kb on - strand, within SO0047 at 53.771 kb on + strand, within SO0047 at 53.777 kb on - strand, within SO0047 at 53.906 kb on + strand, within SO0047 at 54.015 kb on + strand, within SO0047 at 54.049 kb on + strand, within SO0047 at 54.349 kb on - strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.360 kb on + strand at 54.360 kb on + strand at 54.361 kb on - strand at 54.361 kb on - strand at 54.362 kb on - strand at 54.401 kb on - strand at 54.449 kb on + strand at 54.449 kb on + strand at 54.510 kb on + strand at 54.510 kb on + strand at 54.518 kb on - strand at 54.518 kb on - strand at 54.518 kb on - strand at 54.518 kb on - strand at 54.520 kb on + strand at 54.528 kb on - strand at 54.528 kb on - strand at 54.624 kb on + strand, within SO0048 at 54.632 kb on - strand, within SO0048 at 54.632 kb on - strand, within SO0048 at 54.660 kb on + strand, within SO0048 at 54.676 kb on - strand, within SO0048 at 54.769 kb on + strand, within SO0048 at 54.904 kb on - strand, within SO0048 at 54.940 kb on + strand, within SO0048 at 54.940 kb on + strand, within SO0048 at 54.948 kb on - strand, within SO0048 at 54.948 kb on - strand, within SO0048 at 54.948 kb on - strand, within SO0048 at 54.974 kb on + strand, within SO0048 at 54.974 kb on + strand, within SO0048 at 55.075 kb on + strand, within SO0048 at 55.083 kb on - strand, within SO0048 at 55.159 kb on + strand, within SO0048 at 55.164 kb on + strand, within SO0048 at 55.180 kb on - strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.365 kb on - strand, within SO0048 at 55.438 kb on - strand at 55.495 kb on + strand at 55.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 15 mM remove 53,758 - SO0047 0.46 +1.2 53,771 + SO0047 0.47 +0.2 53,777 - SO0047 0.48 -0.5 53,906 + SO0047 0.58 +0.3 54,015 + SO0047 0.67 -0.4 54,049 + SO0047 0.70 -0.4 54,349 - -0.6 54,353 + -1.8 54,353 + +0.7 54,353 + +0.1 54,353 + -0.0 54,353 + -0.6 54,360 + -0.7 54,360 + -0.3 54,361 - -0.1 54,361 - -0.2 54,362 - -0.3 54,401 - -1.0 54,449 + +0.4 54,449 + +1.1 54,510 + -0.3 54,510 + +0.0 54,518 - -0.7 54,518 - +0.6 54,518 - -0.6 54,518 - +0.7 54,520 + +0.2 54,528 - +0.3 54,528 - +0.2 54,624 + SO0048 0.16 +0.3 54,632 - SO0048 0.17 +0.3 54,632 - SO0048 0.17 +0.5 54,660 + SO0048 0.20 -0.2 54,676 - SO0048 0.21 +0.9 54,769 + SO0048 0.30 +0.2 54,904 - SO0048 0.43 +0.4 54,940 + SO0048 0.47 +1.5 54,940 + SO0048 0.47 +0.2 54,948 - SO0048 0.48 +0.5 54,948 - SO0048 0.48 +0.8 54,948 - SO0048 0.48 +0.7 54,974 + SO0048 0.50 -0.9 54,974 + SO0048 0.50 +1.2 55,075 + SO0048 0.60 +0.5 55,083 - SO0048 0.61 -0.0 55,159 + SO0048 0.68 +0.6 55,164 + SO0048 0.68 +0.3 55,180 - SO0048 0.70 +0.2 55,277 + SO0048 0.79 -1.3 55,277 + SO0048 0.79 +0.5 55,277 + SO0048 0.79 +0.2 55,277 + SO0048 0.79 +0.8 55,285 - SO0048 0.80 +0.1 55,285 - SO0048 0.80 +0.6 55,285 - SO0048 0.80 -0.3 55,285 - SO0048 0.80 +0.2 55,365 - SO0048 0.88 -0.0 55,438 - +0.3 55,495 + +0.8 55,495 + +0.5
Or see this region's nucleotide sequence