Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_864 and HP15_865 are separated by 30 nucleotides HP15_865 and HP15_866 overlap by 10 nucleotides HP15_866 and HP15_867 are separated by 37 nucleotides HP15_867 and HP15_868 are separated by 21 nucleotides
HP15_864: HP15_864 - enoyl-CoA hydratase/isomerase family protein, at 886,007 to 886,852
_864
HP15_865: HP15_865 - abortive infection protein, at 886,883 to 887,473
_865
HP15_866: HP15_866 - conserved hypothetical protein, membrane, at 887,464 to 887,883
_866
HP15_867: HP15_867 - protein containing AIG2-like domain, at 887,921 to 888,274
_867
HP15_868: HP15_868 - transcriptional regulator, LysR family, at 888,296 to 889,177
_868
Position (kb) 886
887
888 Strain fitness (log2 ratio) -2
-1
0
1 at 885.908 kb on + strand at 885.912 kb on + strand at 885.913 kb on + strand at 886.087 kb on - strand at 886.117 kb on + strand, within HP15_864 at 886.130 kb on - strand, within HP15_864 at 886.222 kb on - strand, within HP15_864 at 886.281 kb on + strand, within HP15_864 at 886.304 kb on + strand, within HP15_864 at 886.423 kb on - strand, within HP15_864 at 886.522 kb on + strand, within HP15_864 at 886.615 kb on + strand, within HP15_864 at 886.694 kb on + strand, within HP15_864 at 886.706 kb on + strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.716 kb on + strand, within HP15_864 at 886.790 kb on + strand at 886.925 kb on - strand at 887.011 kb on + strand, within HP15_865 at 887.021 kb on + strand, within HP15_865 at 887.195 kb on + strand, within HP15_865 at 887.252 kb on + strand, within HP15_865 at 887.270 kb on - strand, within HP15_865 at 887.318 kb on + strand, within HP15_865 at 887.367 kb on - strand, within HP15_865 at 887.376 kb on + strand, within HP15_865 at 887.424 kb on + strand at 887.432 kb on - strand at 887.432 kb on - strand at 887.513 kb on - strand, within HP15_866 at 887.545 kb on + strand, within HP15_866 at 887.589 kb on + strand, within HP15_866 at 887.667 kb on + strand, within HP15_866 at 887.776 kb on - strand, within HP15_866 at 887.862 kb on + strand at 887.921 kb on - strand at 887.988 kb on + strand, within HP15_867 at 887.994 kb on + strand, within HP15_867 at 888.214 kb on + strand, within HP15_867 at 888.237 kb on + strand, within HP15_867 at 888.338 kb on + strand at 888.355 kb on - strand at 888.402 kb on - strand, within HP15_868 at 888.402 kb on - strand, within HP15_868 at 888.473 kb on + strand, within HP15_868
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 885,908 + +1.0 885,912 + +0.5 885,913 + -0.6 886,087 - -2.0 886,117 + HP15_864 0.13 -1.0 886,130 - HP15_864 0.15 -1.0 886,222 - HP15_864 0.25 +0.6 886,281 + HP15_864 0.32 +0.9 886,304 + HP15_864 0.35 -0.2 886,423 - HP15_864 0.49 +1.2 886,522 + HP15_864 0.61 +1.1 886,615 + HP15_864 0.72 +1.1 886,694 + HP15_864 0.81 -0.1 886,706 + HP15_864 0.83 -0.9 886,714 - HP15_864 0.84 +0.1 886,714 - HP15_864 0.84 +0.9 886,716 + HP15_864 0.84 -0.7 886,790 + +1.0 886,925 - +0.8 887,011 + HP15_865 0.22 +0.4 887,021 + HP15_865 0.23 -0.6 887,195 + HP15_865 0.53 -0.4 887,252 + HP15_865 0.62 +1.1 887,270 - HP15_865 0.65 -0.2 887,318 + HP15_865 0.74 -1.0 887,367 - HP15_865 0.82 -0.7 887,376 + HP15_865 0.83 -0.7 887,424 + +0.8 887,432 - +0.1 887,432 - +1.0 887,513 - HP15_866 0.12 -0.4 887,545 + HP15_866 0.19 +1.0 887,589 + HP15_866 0.30 +0.9 887,667 + HP15_866 0.48 +1.2 887,776 - HP15_866 0.74 +0.4 887,862 + +0.5 887,921 - -0.1 887,988 + HP15_867 0.19 +0.1 887,994 + HP15_867 0.21 -1.0 888,214 + HP15_867 0.83 -0.1 888,237 + HP15_867 0.89 -0.1 888,338 + -0.0 888,355 - +0.7 888,402 - HP15_868 0.12 -0.5 888,402 - HP15_868 0.12 -0.2 888,473 + HP15_868 0.20 -0.3
Or see this region's nucleotide sequence