Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0897 and Psest_0898 overlap by 4 nucleotides Psest_0898 and Psest_0899 are separated by 78 nucleotides
Psest_0897: Psest_0897 - VRR-NUC domain., at 972,554 to 974,193
_0897
Psest_0898: Psest_0898 - hypothetical protein, at 974,190 to 974,696
_0898
Psest_0899: Psest_0899 - Excinuclease ATPase subunit, at 974,775 to 977,426
_0899
Position (kb) 974
975
976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 973.795 kb on + strand, within Psest_0897 at 973.796 kb on - strand, within Psest_0897 at 973.796 kb on - strand, within Psest_0897 at 973.796 kb on - strand, within Psest_0897 at 973.829 kb on + strand, within Psest_0897 at 973.830 kb on - strand, within Psest_0897 at 973.853 kb on - strand, within Psest_0897 at 973.853 kb on - strand, within Psest_0897 at 973.947 kb on - strand, within Psest_0897 at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.170 kb on + strand at 974.170 kb on + strand at 974.170 kb on + strand at 974.170 kb on + strand at 974.171 kb on - strand at 974.331 kb on + strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.344 kb on + strand, within Psest_0898 at 974.344 kb on + strand, within Psest_0898 at 974.350 kb on + strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.419 kb on + strand, within Psest_0898 at 974.419 kb on + strand, within Psest_0898 at 974.420 kb on - strand, within Psest_0898 at 974.420 kb on - strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.560 kb on - strand, within Psest_0898 at 974.560 kb on - strand, within Psest_0898 at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.769 kb on - strand at 974.786 kb on + strand at 974.786 kb on + strand at 974.786 kb on + strand at 974.787 kb on - strand at 974.787 kb on - strand at 974.787 kb on - strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.196 kb on - strand, within Psest_0899 at 975.264 kb on + strand, within Psest_0899 at 975.264 kb on + strand, within Psest_0899 at 975.264 kb on + strand, within Psest_0899 at 975.265 kb on - strand, within Psest_0899 at 975.265 kb on - strand, within Psest_0899 at 975.265 kb on - strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.474 kb on + strand, within Psest_0899 at 975.474 kb on + strand, within Psest_0899 at 975.534 kb on + strand, within Psest_0899 at 975.534 kb on + strand, within Psest_0899 at 975.534 kb on + strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.564 kb on + strand, within Psest_0899 at 975.564 kb on + strand, within Psest_0899 at 975.565 kb on - strand, within Psest_0899 at 975.565 kb on - strand, within Psest_0899 at 975.890 kb on + strand, within Psest_0899 at 975.976 kb on + strand, within Psest_0899 at 975.976 kb on + strand, within Psest_0899 at 975.977 kb on - strand, within Psest_0899 at 975.988 kb on - strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.090 kb on + strand, within Psest_0899 at 976.090 kb on + strand, within Psest_0899 at 976.090 kb on + strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.140 kb on + strand, within Psest_0899 at 976.140 kb on + strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.320 kb on - strand, within Psest_0899 at 976.636 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.768 kb on - strand, within Psest_0899 at 976.870 kb on - strand, within Psest_0899 at 977.049 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.245 kb on + strand at 977.424 kb on + strand at 977.424 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.531 kb on + strand at 977.531 kb on + strand at 977.532 kb on - strand at 977.549 kb on - strand at 977.560 kb on + strand at 977.560 kb on + strand at 977.561 kb on - strand at 977.561 kb on - strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.666 kb on - strand at 977.666 kb on - strand at 977.666 kb on - strand at 977.752 kb on + strand at 977.752 kb on + strand at 977.753 kb on - strand at 977.753 kb on - strand at 977.808 kb on - strand at 977.808 kb on - strand at 977.936 kb on + strand at 977.937 kb on - strand at 977.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 973,795 + Psest_0897 0.76 -0.7 973,796 - Psest_0897 0.76 +1.6 973,796 - Psest_0897 0.76 +1.3 973,796 - Psest_0897 0.76 +0.3 973,829 + Psest_0897 0.78 -0.1 973,830 - Psest_0897 0.78 +1.0 973,853 - Psest_0897 0.79 +0.5 973,853 - Psest_0897 0.79 +0.1 973,947 - Psest_0897 0.85 -0.0 974,162 + +0.1 974,162 + -0.0 974,162 + -1.1 974,162 + +0.6 974,162 + -0.4 974,162 + +1.8 974,162 + -2.5 974,163 - -0.3 974,163 - -0.7 974,163 - -0.0 974,163 - -2.4 974,163 - -1.8 974,163 - -2.6 974,163 - -2.9 974,163 - -0.2 974,170 + -2.1 974,170 + +1.1 974,170 + +1.0 974,170 + -0.3 974,171 - +1.1 974,331 + Psest_0898 0.28 +0.6 974,332 - Psest_0898 0.28 -1.0 974,332 - Psest_0898 0.28 +0.9 974,332 - Psest_0898 0.28 -1.3 974,332 - Psest_0898 0.28 -2.2 974,344 + Psest_0898 0.30 +1.8 974,344 + Psest_0898 0.30 +0.7 974,350 + Psest_0898 0.32 -0.1 974,351 - Psest_0898 0.32 +0.2 974,351 - Psest_0898 0.32 +2.0 974,351 - Psest_0898 0.32 -1.3 974,351 - Psest_0898 0.32 +0.2 974,351 - Psest_0898 0.32 +1.4 974,419 + Psest_0898 0.45 -1.1 974,419 + Psest_0898 0.45 -3.2 974,420 - Psest_0898 0.45 -0.2 974,420 - Psest_0898 0.45 -2.1 974,559 + Psest_0898 0.73 -1.8 974,559 + Psest_0898 0.73 -1.6 974,559 + Psest_0898 0.73 -0.7 974,559 + Psest_0898 0.73 +0.5 974,560 - Psest_0898 0.73 -2.1 974,560 - Psest_0898 0.73 -0.9 974,761 + +0.9 974,761 + +2.8 974,761 + -1.1 974,761 + -0.5 974,761 + -1.3 974,761 + +0.6 974,769 - +0.2 974,786 + -1.6 974,786 + -0.0 974,786 + -0.4 974,787 - -2.6 974,787 - -0.5 974,787 - -0.1 974,955 + -1.7 974,955 + -0.6 974,955 + +0.6 974,955 + -0.2 974,955 + +1.5 974,955 + -0.7 974,955 + +2.2 974,955 + +0.5 974,955 + +0.7 974,955 + +1.2 974,955 + -1.8 974,955 + -1.0 974,955 + -0.8 974,956 - -0.6 974,956 - -0.9 974,956 - +0.9 974,956 - +2.9 974,956 - -1.2 974,956 - +1.6 975,038 - +0.4 975,038 - -0.8 975,038 - -0.7 975,038 - +0.3 975,038 - -1.4 975,153 + Psest_0899 0.14 -0.4 975,153 + Psest_0899 0.14 -0.0 975,153 + Psest_0899 0.14 +2.2 975,153 + Psest_0899 0.14 +0.3 975,153 + Psest_0899 0.14 +0.8 975,153 + Psest_0899 0.14 +1.1 975,153 + Psest_0899 0.14 +0.2 975,153 + Psest_0899 0.14 -0.6 975,153 + Psest_0899 0.14 -1.1 975,153 + Psest_0899 0.14 -0.2 975,154 - Psest_0899 0.14 -0.4 975,154 - Psest_0899 0.14 -1.8 975,154 - Psest_0899 0.14 +0.6 975,154 - Psest_0899 0.14 +0.1 975,154 - Psest_0899 0.14 +3.2 975,154 - Psest_0899 0.14 +0.8 975,154 - Psest_0899 0.14 +1.7 975,196 - Psest_0899 0.16 +0.3 975,264 + Psest_0899 0.18 -1.1 975,264 + Psest_0899 0.18 -0.8 975,264 + Psest_0899 0.18 +0.2 975,265 - Psest_0899 0.18 +0.8 975,265 - Psest_0899 0.18 +0.0 975,265 - Psest_0899 0.18 -2.6 975,440 + Psest_0899 0.25 -0.3 975,440 + Psest_0899 0.25 -1.3 975,440 + Psest_0899 0.25 +0.5 975,440 + Psest_0899 0.25 +0.9 975,440 + Psest_0899 0.25 +1.1 975,441 - Psest_0899 0.25 +0.6 975,441 - Psest_0899 0.25 -0.4 975,441 - Psest_0899 0.25 -1.2 975,441 - Psest_0899 0.25 -1.1 975,474 + Psest_0899 0.26 -1.8 975,474 + Psest_0899 0.26 -2.0 975,534 + Psest_0899 0.29 +0.6 975,534 + Psest_0899 0.29 +0.0 975,534 + Psest_0899 0.29 +0.1 975,535 - Psest_0899 0.29 -1.1 975,535 - Psest_0899 0.29 -1.8 975,535 - Psest_0899 0.29 -2.0 975,535 - Psest_0899 0.29 -2.6 975,535 - Psest_0899 0.29 -0.2 975,564 + Psest_0899 0.30 -0.2 975,564 + Psest_0899 0.30 +2.2 975,565 - Psest_0899 0.30 +0.1 975,565 - Psest_0899 0.30 +1.2 975,890 + Psest_0899 0.42 -1.3 975,976 + Psest_0899 0.45 +0.0 975,976 + Psest_0899 0.45 -0.1 975,977 - Psest_0899 0.45 +0.3 975,988 - Psest_0899 0.46 +1.9 976,060 + Psest_0899 0.48 -0.2 976,060 + Psest_0899 0.48 +0.5 976,060 + Psest_0899 0.48 -0.7 976,060 + Psest_0899 0.48 -0.2 976,060 + Psest_0899 0.48 -2.9 976,086 + Psest_0899 0.49 -0.5 976,086 + Psest_0899 0.49 -1.1 976,086 + Psest_0899 0.49 +0.2 976,086 + Psest_0899 0.49 +1.1 976,086 + Psest_0899 0.49 -0.4 976,086 + Psest_0899 0.49 +0.7 976,086 + Psest_0899 0.49 -0.4 976,086 + Psest_0899 0.49 -1.6 976,087 - Psest_0899 0.49 -2.0 976,087 - Psest_0899 0.49 -0.4 976,087 - Psest_0899 0.49 -0.4 976,087 - Psest_0899 0.49 +1.6 976,087 - Psest_0899 0.49 +0.5 976,087 - Psest_0899 0.49 -0.4 976,087 - Psest_0899 0.49 -0.4 976,090 + Psest_0899 0.50 +0.4 976,090 + Psest_0899 0.50 -1.3 976,090 + Psest_0899 0.50 +1.0 976,091 - Psest_0899 0.50 -1.5 976,091 - Psest_0899 0.50 +1.2 976,091 - Psest_0899 0.50 +0.9 976,091 - Psest_0899 0.50 +2.9 976,091 - Psest_0899 0.50 +2.4 976,091 - Psest_0899 0.50 -0.8 976,091 - Psest_0899 0.50 +0.4 976,091 - Psest_0899 0.50 +1.2 976,140 + Psest_0899 0.51 +0.9 976,140 + Psest_0899 0.51 -0.1 976,141 - Psest_0899 0.52 -0.1 976,141 - Psest_0899 0.52 +0.2 976,141 - Psest_0899 0.52 +2.2 976,141 - Psest_0899 0.52 +0.6 976,141 - Psest_0899 0.52 +1.6 976,141 - Psest_0899 0.52 -0.0 976,320 - Psest_0899 0.58 +1.5 976,636 + Psest_0899 0.70 -0.5 976,701 + Psest_0899 0.73 +1.6 976,701 + Psest_0899 0.73 -2.4 976,701 + Psest_0899 0.73 +0.5 976,701 + Psest_0899 0.73 -1.1 976,701 + Psest_0899 0.73 -0.5 976,701 + Psest_0899 0.73 -0.2 976,701 + Psest_0899 0.73 -0.4 976,701 + Psest_0899 0.73 +2.2 976,701 + Psest_0899 0.73 -1.6 976,701 + Psest_0899 0.73 +0.2 976,701 + Psest_0899 0.73 +0.1 976,701 + Psest_0899 0.73 -0.1 976,702 - Psest_0899 0.73 +0.2 976,702 - Psest_0899 0.73 -1.8 976,702 - Psest_0899 0.73 -0.9 976,702 - Psest_0899 0.73 -0.3 976,702 - Psest_0899 0.73 -0.3 976,702 - Psest_0899 0.73 +0.8 976,768 - Psest_0899 0.75 +0.2 976,870 - Psest_0899 0.79 +0.9 977,049 + Psest_0899 0.86 +1.8 977,151 + Psest_0899 0.90 +1.0 977,151 + Psest_0899 0.90 +1.2 977,151 + Psest_0899 0.90 -1.1 977,151 + Psest_0899 0.90 -0.5 977,152 - Psest_0899 0.90 -1.6 977,152 - Psest_0899 0.90 -1.5 977,152 - Psest_0899 0.90 +0.6 977,152 - Psest_0899 0.90 +0.3 977,245 + +0.7 977,424 + +0.6 977,424 + -1.1 977,429 + +0.7 977,429 + +0.3 977,429 + -0.7 977,429 + -0.7 977,429 + -1.4 977,430 - +0.8 977,430 - -1.2 977,430 - -1.3 977,430 - -0.2 977,430 - -0.4 977,430 - -2.6 977,430 - +2.2 977,430 - -1.6 977,430 - -0.7 977,430 - -0.6 977,430 - -0.4 977,430 - +0.7 977,430 - +1.0 977,531 + +0.6 977,531 + -3.3 977,532 - +0.2 977,549 - +0.7 977,560 + -2.6 977,560 + +0.8 977,561 - -0.4 977,561 - +0.5 977,665 + -0.2 977,665 + -1.2 977,665 + -0.6 977,665 + -0.4 977,665 + +1.0 977,666 - -1.5 977,666 - +1.1 977,666 - +0.2 977,752 + +1.8 977,752 + -1.0 977,753 - +0.9 977,753 - +1.0 977,808 - +0.2 977,808 - +0.1 977,936 + -0.3 977,937 - +0.9 977,937 - -1.1
Or see this region's nucleotide sequence