Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_852 and HP15_853 are separated by 18 nucleotides HP15_853 and HP15_854 are separated by 64 nucleotides HP15_854 and HP15_855 overlap by 1 nucleotides HP15_855 and HP15_856 are separated by 6 nucleotides
HP15_852: HP15_852 - MaoC-like dehydratase, at 869,898 to 870,368
_852
HP15_853: HP15_853 - RIO1/ZK632.3/MJ0444 family protein, at 870,387 to 871,283
_853
HP15_854: HP15_854 - conserved hypothetical protein, secreted, at 871,348 to 872,208
_854
HP15_855: HP15_855 - M23 peptidase domain protein, at 872,208 to 873,176
_855
HP15_856: HP15_856 - UspA domain protein, at 873,183 to 873,602
_856
Position (kb) 871
872
873 Strain fitness (log2 ratio) -1
0
1 at 870.377 kb on + strand at 870.403 kb on - strand at 870.538 kb on + strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.584 kb on + strand, within HP15_853 at 870.820 kb on - strand, within HP15_853 at 870.858 kb on - strand, within HP15_853 at 870.911 kb on - strand, within HP15_853 at 870.944 kb on + strand, within HP15_853 at 871.038 kb on + strand, within HP15_853 at 871.046 kb on - strand, within HP15_853 at 871.084 kb on - strand, within HP15_853 at 871.144 kb on + strand, within HP15_853 at 871.157 kb on + strand, within HP15_853 at 871.302 kb on + strand at 871.313 kb on + strand at 871.320 kb on - strand at 871.345 kb on - strand at 871.394 kb on + strand at 871.394 kb on + strand at 871.428 kb on - strand at 871.509 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.562 kb on - strand, within HP15_854 at 871.566 kb on + strand, within HP15_854 at 871.567 kb on - strand, within HP15_854 at 871.574 kb on - strand, within HP15_854 at 871.757 kb on - strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.848 kb on - strand, within HP15_854 at 871.931 kb on + strand, within HP15_854 at 872.043 kb on + strand, within HP15_854 at 872.048 kb on + strand, within HP15_854 at 872.165 kb on + strand at 872.165 kb on + strand at 872.272 kb on + strand at 872.520 kb on + strand, within HP15_855 at 872.671 kb on - strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.856 kb on - strand, within HP15_855 at 873.014 kb on + strand, within HP15_855 at 873.031 kb on + strand, within HP15_855 at 873.052 kb on + strand, within HP15_855 at 873.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 870,377 + -0.6 870,403 - -1.0 870,538 + HP15_853 0.17 +0.7 870,582 - HP15_853 0.22 -1.6 870,582 - HP15_853 0.22 -0.3 870,584 + HP15_853 0.22 -0.1 870,820 - HP15_853 0.48 -0.6 870,858 - HP15_853 0.53 +0.7 870,911 - HP15_853 0.58 +0.4 870,944 + HP15_853 0.62 -0.3 871,038 + HP15_853 0.73 -0.8 871,046 - HP15_853 0.73 +0.2 871,084 - HP15_853 0.78 +0.6 871,144 + HP15_853 0.84 -0.1 871,157 + HP15_853 0.86 +0.3 871,302 + -0.2 871,313 + +0.7 871,320 - +1.0 871,345 - +0.2 871,394 + +0.5 871,394 + +0.2 871,428 - -1.3 871,509 - HP15_854 0.19 +0.2 871,511 - HP15_854 0.19 -0.7 871,511 - HP15_854 0.19 +1.0 871,511 - HP15_854 0.19 -0.1 871,557 - HP15_854 0.24 -1.0 871,557 - HP15_854 0.24 +0.4 871,562 - HP15_854 0.25 -0.5 871,566 + HP15_854 0.25 -0.5 871,567 - HP15_854 0.25 -0.6 871,574 - HP15_854 0.26 -0.3 871,757 - HP15_854 0.48 -0.3 871,798 + HP15_854 0.52 -0.4 871,798 + HP15_854 0.52 -0.5 871,848 - HP15_854 0.58 +1.0 871,931 + HP15_854 0.68 -0.5 872,043 + HP15_854 0.81 -0.7 872,048 + HP15_854 0.81 -0.5 872,165 + +1.1 872,165 + -0.3 872,272 + -0.2 872,520 + HP15_855 0.32 -0.3 872,671 - HP15_855 0.48 -0.1 872,684 + HP15_855 0.49 +0.8 872,684 + HP15_855 0.49 -0.5 872,856 - HP15_855 0.67 -0.3 873,014 + HP15_855 0.83 +0.5 873,031 + HP15_855 0.85 +0.8 873,052 + HP15_855 0.87 -0.2 873,151 + -0.5
Or see this region's nucleotide sequence