Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08650

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08640 and PGA1_c08650 are separated by 133 nucleotidesPGA1_c08650 and PGA1_c08660 are separated by 172 nucleotidesPGA1_c08660 and PGA1_c08670 are separated by 97 nucleotides PGA1_c08640: PGA1_c08640 - fructose-1,6-bisphosphatase class 2, at 891,415 to 892,398 _c08640 PGA1_c08650: PGA1_c08650 - homoserine dehydrogenase Hom, at 892,532 to 893,818 _c08650 PGA1_c08660: PGA1_c08660 - hypothetical protein, at 893,991 to 894,320 _c08660 PGA1_c08670: PGA1_c08670 - transcriptional regulator, TetR family, at 894,418 to 895,035 _c08670 Position (kb) 892 893 894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 891.744 kb on - strand, within PGA1_c08640at 891.794 kb on - strand, within PGA1_c08640at 891.920 kb on + strand, within PGA1_c08640at 891.921 kb on - strand, within PGA1_c08640at 891.922 kb on - strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.032 kb on + strand, within PGA1_c08640at 892.040 kb on - strand, within PGA1_c08640at 892.040 kb on - strand, within PGA1_c08640at 892.040 kb on - strand, within PGA1_c08640at 892.040 kb on - strand, within PGA1_c08640at 892.040 kb on - strand, within PGA1_c08640at 892.040 kb on - strand, within PGA1_c08640at 892.040 kb on - strand, within PGA1_c08640at 892.047 kb on + strand, within PGA1_c08640at 892.132 kb on + strand, within PGA1_c08640at 892.347 kb on - strandat 892.420 kb on - strandat 892.441 kb on + strandat 892.538 kb on - strandat 892.538 kb on - strandat 892.538 kb on - strandat 892.538 kb on - strandat 892.538 kb on - strandat 892.538 kb on - strandat 893.911 kb on + strandat 893.911 kb on + strandat 893.968 kb on - strandat 893.976 kb on + strandat 893.994 kb on + strandat 893.994 kb on + strandat 894.002 kb on - strandat 894.002 kb on - strandat 894.002 kb on - strandat 894.017 kb on - strandat 894.055 kb on - strand, within PGA1_c08660at 894.055 kb on - strand, within PGA1_c08660at 894.083 kb on - strand, within PGA1_c08660at 894.083 kb on - strand, within PGA1_c08660at 894.098 kb on + strand, within PGA1_c08660at 894.120 kb on + strand, within PGA1_c08660at 894.128 kb on - strand, within PGA1_c08660at 894.128 kb on - strand, within PGA1_c08660at 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.313 kb on - strandat 894.339 kb on + strandat 894.347 kb on - strandat 894.347 kb on - strandat 894.347 kb on - strandat 894.417 kb on + strandat 894.426 kb on + strandat 894.511 kb on + strand, within PGA1_c08670at 894.559 kb on + strand, within PGA1_c08670at 894.561 kb on + strand, within PGA1_c08670at 894.567 kb on + strand, within PGA1_c08670at 894.602 kb on - strand, within PGA1_c08670at 894.603 kb on + strand, within PGA1_c08670at 894.653 kb on + strand, within PGA1_c08670at 894.653 kb on + strand, within PGA1_c08670at 894.658 kb on + strand, within PGA1_c08670at 894.712 kb on + strand, within PGA1_c08670at 894.713 kb on - strand, within PGA1_c08670at 894.720 kb on - strand, within PGA1_c08670at 894.721 kb on - strand, within PGA1_c08670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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891,744 - PGA1_c08640 0.33 +1.0
891,794 - PGA1_c08640 0.39 +1.2
891,920 + PGA1_c08640 0.51 -0.8
891,921 - PGA1_c08640 0.51 +0.5
891,922 - PGA1_c08640 0.52 +0.5
892,032 + PGA1_c08640 0.63 -1.0
892,032 + PGA1_c08640 0.63 -0.2
892,032 + PGA1_c08640 0.63 +0.2
892,032 + PGA1_c08640 0.63 +0.7
892,032 + PGA1_c08640 0.63 +1.8
892,032 + PGA1_c08640 0.63 -0.9
892,032 + PGA1_c08640 0.63 -1.6
892,032 + PGA1_c08640 0.63 +0.9
892,040 - PGA1_c08640 0.64 +0.8
892,040 - PGA1_c08640 0.64 -0.3
892,040 - PGA1_c08640 0.64 -0.5
892,040 - PGA1_c08640 0.64 +0.3
892,040 - PGA1_c08640 0.64 +0.4
892,040 - PGA1_c08640 0.64 +1.1
892,040 - PGA1_c08640 0.64 +0.5
892,047 + PGA1_c08640 0.64 -0.3
892,132 + PGA1_c08640 0.73 +0.9
892,347 - +0.1
892,420 - -0.3
892,441 + -0.0
892,538 - +0.4
892,538 - -0.0
892,538 - -1.0
892,538 - +0.6
892,538 - -0.4
892,538 - +0.8
893,911 + +0.1
893,911 + -0.3
893,968 - -0.5
893,976 + -0.1
893,994 + +1.0
893,994 + +0.5
894,002 - +0.2
894,002 - +0.6
894,002 - -0.0
894,017 - +0.4
894,055 - PGA1_c08660 0.19 -0.6
894,055 - PGA1_c08660 0.19 -1.6
894,083 - PGA1_c08660 0.28 -2.1
894,083 - PGA1_c08660 0.28 -0.1
894,098 + PGA1_c08660 0.32 +0.7
894,120 + PGA1_c08660 0.39 +0.4
894,128 - PGA1_c08660 0.42 +0.4
894,128 - PGA1_c08660 0.42 -1.5
894,295 + -0.5
894,295 + -0.4
894,295 + +0.1
894,295 + -0.9
894,295 + +0.6
894,295 + +0.9
894,295 + -0.9
894,295 + +0.4
894,295 + -1.6
894,295 + +0.2
894,303 - +0.1
894,303 - -0.9
894,303 - -0.2
894,303 - +0.5
894,303 - +0.8
894,303 - -0.4
894,303 - +0.2
894,303 - -0.4
894,303 - -0.6
894,303 - -0.1
894,303 - -0.4
894,313 - +0.0
894,339 + -0.6
894,347 - +1.8
894,347 - +1.3
894,347 - +1.5
894,417 + -0.0
894,426 + -1.0
894,511 + PGA1_c08670 0.15 -0.8
894,559 + PGA1_c08670 0.23 -0.6
894,561 + PGA1_c08670 0.23 -3.3
894,567 + PGA1_c08670 0.24 -1.2
894,602 - PGA1_c08670 0.30 -1.8
894,603 + PGA1_c08670 0.30 -2.2
894,653 + PGA1_c08670 0.38 -2.4
894,653 + PGA1_c08670 0.38 -1.0
894,658 + PGA1_c08670 0.39 -1.3
894,712 + PGA1_c08670 0.48 -1.3
894,713 - PGA1_c08670 0.48 -1.6
894,720 - PGA1_c08670 0.49 -1.3
894,721 - PGA1_c08670 0.49 -1.3

Or see this region's nucleotide sequence