Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0755

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0753 and Psest_0754 are separated by 88 nucleotidesPsest_0754 and Psest_0755 are separated by 92 nucleotidesPsest_0755 and Psest_0756 are separated by 94 nucleotidesPsest_0756 and Psest_0757 are separated by 42 nucleotides Psest_0753: Psest_0753 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 824,690 to 825,814 _0753 Psest_0754: Psest_0754 - Predicted transcriptional regulators, at 825,903 to 826,208 _0754 Psest_0755: Psest_0755 - Bacterial regulatory helix-turn-helix proteins, AraC family., at 826,301 to 827,098 _0755 Psest_0756: Psest_0756 - alkylhydroperoxidase AhpD family core domain, at 827,193 to 827,651 _0756 Psest_0757: Psest_0757 - hypothetical protein, at 827,694 to 828,167 _0757 Position (kb) 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 825.302 kb on + strand, within Psest_0753at 825.334 kb on + strand, within Psest_0753at 825.334 kb on + strand, within Psest_0753at 825.434 kb on + strand, within Psest_0753at 825.434 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.512 kb on + strand, within Psest_0753at 825.516 kb on + strand, within Psest_0753at 825.516 kb on + strand, within Psest_0753at 825.516 kb on + strand, within Psest_0753at 825.517 kb on - strand, within Psest_0753at 825.517 kb on - strand, within Psest_0753at 825.608 kb on + strand, within Psest_0753at 825.608 kb on + strand, within Psest_0753at 825.608 kb on + strand, within Psest_0753at 825.609 kb on - strand, within Psest_0753at 825.609 kb on - strand, within Psest_0753at 825.620 kb on + strand, within Psest_0753at 825.620 kb on + strand, within Psest_0753at 825.620 kb on + strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.736 kb on + strandat 825.765 kb on - strandat 825.785 kb on + strandat 825.786 kb on - strandat 825.786 kb on - strandat 825.870 kb on + strandat 825.902 kb on + strandat 825.902 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.911 kb on - strandat 825.911 kb on - strandat 825.911 kb on - strandat 825.911 kb on - strandat 826.086 kb on + strand, within Psest_0754at 826.086 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.599 kb on - strand, within Psest_0755at 826.599 kb on - strand, within Psest_0755at 826.744 kb on + strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.978 kb on - strand, within Psest_0755at 827.022 kb on + strandat 827.022 kb on + strandat 827.022 kb on + strandat 827.022 kb on + strandat 827.023 kb on - strandat 827.130 kb on - strandat 827.134 kb on + strandat 827.134 kb on + strandat 827.134 kb on + strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.205 kb on + strandat 827.205 kb on + strandat 827.206 kb on - strandat 827.257 kb on - strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.637 kb on + strandat 827.637 kb on + strandat 827.638 kb on - strandat 827.840 kb on - strand, within Psest_0757at 827.852 kb on - strand, within Psest_0757at 827.912 kb on + strand, within Psest_0757at 828.016 kb on - strand, within Psest_0757at 828.094 kb on + strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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825,302 + Psest_0753 0.54 +0.3
825,334 + Psest_0753 0.57 +1.1
825,334 + Psest_0753 0.57 -1.1
825,434 + Psest_0753 0.66 -0.6
825,434 + Psest_0753 0.66 +0.5
825,470 + Psest_0753 0.69 +0.6
825,470 + Psest_0753 0.69 -0.1
825,470 + Psest_0753 0.69 -1.4
825,470 + Psest_0753 0.69 -0.8
825,470 + Psest_0753 0.69 -0.5
825,471 - Psest_0753 0.69 +1.2
825,471 - Psest_0753 0.69 -1.1
825,471 - Psest_0753 0.69 +1.4
825,471 - Psest_0753 0.69 -0.6
825,512 + Psest_0753 0.73 +0.8
825,516 + Psest_0753 0.73 -2.9
825,516 + Psest_0753 0.73 +2.3
825,516 + Psest_0753 0.73 +0.6
825,517 - Psest_0753 0.74 -1.2
825,517 - Psest_0753 0.74 -0.5
825,608 + Psest_0753 0.82 -1.7
825,608 + Psest_0753 0.82 +0.1
825,608 + Psest_0753 0.82 -2.3
825,609 - Psest_0753 0.82 +0.0
825,609 - Psest_0753 0.82 +1.2
825,620 + Psest_0753 0.83 -0.1
825,620 + Psest_0753 0.83 +0.9
825,620 + Psest_0753 0.83 +0.6
825,621 - Psest_0753 0.83 +0.8
825,621 - Psest_0753 0.83 +1.2
825,621 - Psest_0753 0.83 +0.9
825,621 - Psest_0753 0.83 +2.4
825,621 - Psest_0753 0.83 +0.4
825,736 + -2.6
825,765 - -2.2
825,785 + -2.6
825,786 - +1.2
825,786 - +0.2
825,870 + +1.7
825,902 + +0.2
825,902 + -1.8
825,910 + +0.0
825,910 + -2.1
825,910 + -0.2
825,910 + -0.4
825,910 + +1.1
825,910 + -0.0
825,910 + -0.6
825,910 + +0.6
825,910 + -0.5
825,910 + +0.5
825,911 - +1.1
825,911 - +0.3
825,911 - -0.5
825,911 - +0.7
826,086 + Psest_0754 0.60 -0.7
826,086 + Psest_0754 0.60 -1.8
826,146 + Psest_0754 0.79 +0.2
826,146 + Psest_0754 0.79 -0.2
826,146 + Psest_0754 0.79 -2.4
826,146 + Psest_0754 0.79 +2.2
826,147 - Psest_0754 0.80 +0.8
826,147 - Psest_0754 0.80 +1.2
826,147 - Psest_0754 0.80 +0.2
826,147 - Psest_0754 0.80 +0.0
826,147 - Psest_0754 0.80 -0.4
826,149 + Psest_0754 0.80 +0.6
826,149 + Psest_0754 0.80 +0.6
826,149 + Psest_0754 0.80 +1.0
826,149 + Psest_0754 0.80 +0.1
826,149 + Psest_0754 0.80 +0.0
826,149 + Psest_0754 0.80 +0.1
826,149 + Psest_0754 0.80 +0.8
826,150 - Psest_0754 0.81 +0.2
826,150 - Psest_0754 0.81 -0.2
826,150 - Psest_0754 0.81 -0.4
826,150 - Psest_0754 0.81 +0.9
826,150 - Psest_0754 0.81 +0.2
826,150 - Psest_0754 0.81 +0.5
826,150 - Psest_0754 0.81 -1.6
826,150 - Psest_0754 0.81 +1.6
826,493 + Psest_0755 0.24 -1.6
826,493 + Psest_0755 0.24 -0.1
826,493 + Psest_0755 0.24 -0.4
826,493 + Psest_0755 0.24 +1.0
826,494 - Psest_0755 0.24 -0.8
826,494 - Psest_0755 0.24 -0.3
826,494 - Psest_0755 0.24 -0.8
826,494 - Psest_0755 0.24 -1.5
826,494 - Psest_0755 0.24 -1.4
826,494 - Psest_0755 0.24 -1.0
826,494 - Psest_0755 0.24 -2.2
826,494 - Psest_0755 0.24 -1.4
826,494 - Psest_0755 0.24 -0.1
826,598 + Psest_0755 0.37 +0.2
826,598 + Psest_0755 0.37 -0.5
826,598 + Psest_0755 0.37 +3.2
826,599 - Psest_0755 0.37 +0.1
826,599 - Psest_0755 0.37 -0.5
826,744 + Psest_0755 0.56 -3.1
826,745 - Psest_0755 0.56 +2.6
826,745 - Psest_0755 0.56 -0.8
826,745 - Psest_0755 0.56 +0.2
826,977 + Psest_0755 0.85 -2.2
826,977 + Psest_0755 0.85 -0.4
826,977 + Psest_0755 0.85 +0.6
826,977 + Psest_0755 0.85 -1.6
826,978 - Psest_0755 0.85 +0.2
827,022 + -2.7
827,022 + -0.8
827,022 + +1.0
827,022 + +0.2
827,023 - -0.5
827,130 - -1.8
827,134 + +1.3
827,134 + -1.1
827,134 + -2.1
827,135 - -0.6
827,135 - -1.6
827,135 - -0.1
827,135 - -0.4
827,135 - +2.7
827,205 + +0.0
827,205 + +1.2
827,206 - -1.2
827,257 - Psest_0756 0.14 +0.0
827,409 + Psest_0756 0.47 -1.6
827,409 + Psest_0756 0.47 -1.7
827,409 + Psest_0756 0.47 -0.1
827,409 + Psest_0756 0.47 -0.3
827,409 + Psest_0756 0.47 -1.4
827,409 + Psest_0756 0.47 +0.7
827,409 + Psest_0756 0.47 +0.8
827,410 - Psest_0756 0.47 -0.6
827,410 - Psest_0756 0.47 +1.4
827,410 - Psest_0756 0.47 +0.8
827,410 - Psest_0756 0.47 -0.3
827,410 - Psest_0756 0.47 +2.6
827,410 - Psest_0756 0.47 +0.2
827,410 - Psest_0756 0.47 +1.2
827,410 - Psest_0756 0.47 +0.2
827,637 + +1.8
827,637 + -0.4
827,638 - +0.5
827,840 - Psest_0757 0.31 +0.7
827,852 - Psest_0757 0.33 +0.4
827,912 + Psest_0757 0.46 +0.6
828,016 - Psest_0757 0.68 +1.3
828,094 + Psest_0757 0.84 +1.4
828,095 - Psest_0757 0.85 -0.8
828,095 - Psest_0757 0.85 +0.3
828,095 - Psest_0757 0.85 -0.8
828,095 - Psest_0757 0.85 -0.8

Or see this region's nucleotide sequence