Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07230

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07210 and PGA1_c07220 overlap by 7 nucleotidesPGA1_c07220 and PGA1_c07230 overlap by 4 nucleotidesPGA1_c07230 and PGA1_c07240 are separated by 12 nucleotides PGA1_c07210: PGA1_c07210 - inositol 2-dehydrogenase IdhA, at 741,603 to 742,589 _c07210 PGA1_c07220: PGA1_c07220 - 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) (from data), at 742,583 to 743,422 _c07220 PGA1_c07230: PGA1_c07230 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data), at 743,419 to 744,276 _c07230 PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) (from data), at 744,289 to 745,281 _c07240 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1at 742.424 kb on + strand, within PGA1_c07210at 742.427 kb on - strand, within PGA1_c07210at 742.477 kb on + strand, within PGA1_c07210at 742.540 kb on + strandat 742.620 kb on - strandat 742.663 kb on + strandat 742.663 kb on + strandat 742.671 kb on - strand, within PGA1_c07220at 742.738 kb on - strand, within PGA1_c07220at 742.790 kb on - strand, within PGA1_c07220at 742.842 kb on - strand, within PGA1_c07220at 742.892 kb on - strand, within PGA1_c07220at 743.023 kb on + strand, within PGA1_c07220at 743.079 kb on + strand, within PGA1_c07220at 743.109 kb on + strand, within PGA1_c07220at 743.127 kb on - strand, within PGA1_c07220at 743.133 kb on - strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.181 kb on + strand, within PGA1_c07220at 743.192 kb on + strand, within PGA1_c07220at 743.262 kb on + strand, within PGA1_c07220at 743.267 kb on + strand, within PGA1_c07220at 743.270 kb on - strand, within PGA1_c07220at 743.271 kb on + strand, within PGA1_c07220at 743.340 kb on - strandat 743.373 kb on + strandat 743.467 kb on - strandat 743.511 kb on + strand, within PGA1_c07230at 743.512 kb on + strand, within PGA1_c07230at 743.519 kb on - strand, within PGA1_c07230at 743.564 kb on + strand, within PGA1_c07230at 743.572 kb on - strand, within PGA1_c07230at 743.572 kb on - strand, within PGA1_c07230at 743.614 kb on - strand, within PGA1_c07230at 743.630 kb on + strand, within PGA1_c07230at 743.630 kb on + strand, within PGA1_c07230at 743.666 kb on - strand, within PGA1_c07230at 743.780 kb on + strand, within PGA1_c07230at 743.795 kb on + strand, within PGA1_c07230at 743.805 kb on + strand, within PGA1_c07230at 743.876 kb on + strand, within PGA1_c07230at 743.884 kb on - strand, within PGA1_c07230at 743.884 kb on - strand, within PGA1_c07230at 743.886 kb on + strand, within PGA1_c07230at 743.894 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.936 kb on - strand, within PGA1_c07230at 744.035 kb on + strand, within PGA1_c07230at 744.078 kb on + strand, within PGA1_c07230at 744.083 kb on + strand, within PGA1_c07230at 744.088 kb on + strand, within PGA1_c07230at 744.096 kb on - strand, within PGA1_c07230at 744.134 kb on + strand, within PGA1_c07230at 744.139 kb on + strand, within PGA1_c07230at 744.162 kb on + strand, within PGA1_c07230at 744.170 kb on - strand, within PGA1_c07230at 744.177 kb on - strand, within PGA1_c07230at 744.184 kb on - strand, within PGA1_c07230at 744.186 kb on + strand, within PGA1_c07230at 744.194 kb on - strandat 744.310 kb on - strandat 744.352 kb on + strandat 744.376 kb on - strandat 744.442 kb on - strand, within PGA1_c07240at 744.571 kb on + strand, within PGA1_c07240at 744.627 kb on - strand, within PGA1_c07240at 744.723 kb on - strand, within PGA1_c07240at 744.733 kb on + strand, within PGA1_c07240at 744.733 kb on + strand, within PGA1_c07240at 744.740 kb on + strand, within PGA1_c07240at 744.741 kb on - strand, within PGA1_c07240at 744.789 kb on + strand, within PGA1_c07240at 744.792 kb on - strand, within PGA1_c07240at 744.792 kb on - strand, within PGA1_c07240at 744.827 kb on + strand, within PGA1_c07240at 744.853 kb on - strand, within PGA1_c07240at 744.862 kb on + strand, within PGA1_c07240at 744.870 kb on - strand, within PGA1_c07240at 744.889 kb on - strand, within PGA1_c07240at 744.944 kb on - strand, within PGA1_c07240at 744.969 kb on + strand, within PGA1_c07240at 745.017 kb on + strand, within PGA1_c07240at 745.049 kb on - strand, within PGA1_c07240at 745.049 kb on - strand, within PGA1_c07240at 745.051 kb on + strand, within PGA1_c07240at 745.079 kb on + strand, within PGA1_c07240at 745.089 kb on + strand, within PGA1_c07240at 745.206 kb on + strandat 745.206 kb on + strandat 745.206 kb on + strandat 745.214 kb on - strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.259 kb on - strandat 745.259 kb on - strandat 745.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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742,424 + PGA1_c07210 0.83 -0.6
742,427 - PGA1_c07210 0.83 +0.2
742,477 + PGA1_c07210 0.89 -0.9
742,540 + -0.4
742,620 - +0.9
742,663 + +0.0
742,663 + +0.4
742,671 - PGA1_c07220 0.10 -0.4
742,738 - PGA1_c07220 0.18 +1.3
742,790 - PGA1_c07220 0.25 +0.8
742,842 - PGA1_c07220 0.31 -1.4
742,892 - PGA1_c07220 0.37 +0.2
743,023 + PGA1_c07220 0.52 +0.5
743,079 + PGA1_c07220 0.59 -0.6
743,109 + PGA1_c07220 0.63 -0.0
743,127 - PGA1_c07220 0.65 +0.2
743,133 - PGA1_c07220 0.65 -0.5
743,156 + PGA1_c07220 0.68 +0.7
743,156 + PGA1_c07220 0.68 -1.3
743,156 + PGA1_c07220 0.68 -0.6
743,156 + PGA1_c07220 0.68 -0.4
743,156 + PGA1_c07220 0.68 -0.4
743,164 - PGA1_c07220 0.69 -0.3
743,164 - PGA1_c07220 0.69 +0.3
743,164 - PGA1_c07220 0.69 +0.3
743,181 + PGA1_c07220 0.71 +0.8
743,192 + PGA1_c07220 0.72 +0.2
743,262 + PGA1_c07220 0.81 +0.0
743,267 + PGA1_c07220 0.81 +0.6
743,270 - PGA1_c07220 0.82 -0.5
743,271 + PGA1_c07220 0.82 -0.2
743,340 - +0.8
743,373 + -0.6
743,467 - -0.2
743,511 + PGA1_c07230 0.11 +0.5
743,512 + PGA1_c07230 0.11 +0.5
743,519 - PGA1_c07230 0.12 +1.0
743,564 + PGA1_c07230 0.17 -1.1
743,572 - PGA1_c07230 0.18 +0.8
743,572 - PGA1_c07230 0.18 -0.1
743,614 - PGA1_c07230 0.23 +0.6
743,630 + PGA1_c07230 0.25 +0.3
743,630 + PGA1_c07230 0.25 +0.6
743,666 - PGA1_c07230 0.29 +1.7
743,780 + PGA1_c07230 0.42 -0.8
743,795 + PGA1_c07230 0.44 +0.8
743,805 + PGA1_c07230 0.45 +1.0
743,876 + PGA1_c07230 0.53 -0.3
743,884 - PGA1_c07230 0.54 +0.5
743,884 - PGA1_c07230 0.54 +1.4
743,886 + PGA1_c07230 0.54 -0.1
743,894 - PGA1_c07230 0.55 +0.4
743,904 - PGA1_c07230 0.57 +1.4
743,904 - PGA1_c07230 0.57 +0.9
743,904 - PGA1_c07230 0.57 +0.4
743,904 - PGA1_c07230 0.57 +1.6
743,904 - PGA1_c07230 0.57 -0.5
743,936 - PGA1_c07230 0.60 +0.9
744,035 + PGA1_c07230 0.72 +0.1
744,078 + PGA1_c07230 0.77 -0.1
744,083 + PGA1_c07230 0.77 +1.0
744,088 + PGA1_c07230 0.78 +0.5
744,096 - PGA1_c07230 0.79 -0.0
744,134 + PGA1_c07230 0.83 +1.2
744,139 + PGA1_c07230 0.84 +0.9
744,162 + PGA1_c07230 0.87 +0.7
744,170 - PGA1_c07230 0.88 +0.9
744,177 - PGA1_c07230 0.88 +0.2
744,184 - PGA1_c07230 0.89 -0.1
744,186 + PGA1_c07230 0.89 +1.1
744,194 - -0.9
744,310 - -1.1
744,352 + +0.4
744,376 - +0.4
744,442 - PGA1_c07240 0.15 +0.2
744,571 + PGA1_c07240 0.28 -0.1
744,627 - PGA1_c07240 0.34 +0.5
744,723 - PGA1_c07240 0.44 -0.7
744,733 + PGA1_c07240 0.45 +0.1
744,733 + PGA1_c07240 0.45 -0.1
744,740 + PGA1_c07240 0.45 +0.5
744,741 - PGA1_c07240 0.46 +0.6
744,789 + PGA1_c07240 0.50 -0.2
744,792 - PGA1_c07240 0.51 +0.2
744,792 - PGA1_c07240 0.51 +0.9
744,827 + PGA1_c07240 0.54 -0.6
744,853 - PGA1_c07240 0.57 +1.1
744,862 + PGA1_c07240 0.58 +0.5
744,870 - PGA1_c07240 0.59 -2.9
744,889 - PGA1_c07240 0.60 +1.3
744,944 - PGA1_c07240 0.66 +0.1
744,969 + PGA1_c07240 0.68 +0.3
745,017 + PGA1_c07240 0.73 +0.6
745,049 - PGA1_c07240 0.77 -0.5
745,049 - PGA1_c07240 0.77 +1.4
745,051 + PGA1_c07240 0.77 -0.1
745,079 + PGA1_c07240 0.80 +0.2
745,089 + PGA1_c07240 0.81 -1.0
745,206 + -0.3
745,206 + -1.8
745,206 + +1.0
745,214 - +0.1
745,251 + -0.6
745,251 + +0.9
745,251 + -0.0
745,251 + -0.2
745,251 + -0.6
745,259 - -0.4
745,259 - -0.3
745,259 - -0.3

Or see this region's nucleotide sequence