Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0649 and Psest_0650 are separated by 196 nucleotides Psest_0650 and Psest_0651 are separated by 94 nucleotides
Psest_0649: Psest_0649 - Glutamate decarboxylase and related PLP-dependent proteins, at 704,318 to 705,841
_0649
Psest_0650: Psest_0650 - RNA polymerase sigma factor, sigma-70 family, at 706,038 to 706,535
_0650
Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023
_0651
Position (kb) 706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 705.552 kb on + strand, within Psest_0649 at 705.552 kb on + strand, within Psest_0649 at 705.552 kb on + strand, within Psest_0649 at 705.553 kb on - strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.588 kb on + strand, within Psest_0649 at 705.589 kb on - strand, within Psest_0649 at 705.589 kb on - strand, within Psest_0649 at 706.040 kb on - strand at 706.089 kb on - strand, within Psest_0650 at 706.089 kb on - strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.201 kb on - strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.352 kb on - strand, within Psest_0650 at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.568 kb on - strand at 706.712 kb on + strand at 706.712 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.716 kb on - strand at 706.822 kb on - strand at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.938 kb on - strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.357 kb on + strand, within Psest_0651 at 707.450 kb on + strand, within Psest_0651 at 707.451 kb on - strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 705,552 + Psest_0649 0.81 -1.1 705,552 + Psest_0649 0.81 -0.6 705,552 + Psest_0649 0.81 -0.7 705,553 - Psest_0649 0.81 +3.3 705,570 + Psest_0649 0.82 -0.3 705,570 + Psest_0649 0.82 -1.9 705,570 + Psest_0649 0.82 +0.3 705,588 + Psest_0649 0.83 -1.3 705,589 - Psest_0649 0.83 +0.9 705,589 - Psest_0649 0.83 +0.9 706,040 - +2.0 706,089 - Psest_0650 0.10 -0.9 706,089 - Psest_0650 0.10 +0.0 706,200 + Psest_0650 0.33 -0.7 706,200 + Psest_0650 0.33 -0.3 706,200 + Psest_0650 0.33 +0.3 706,201 - Psest_0650 0.33 -0.3 706,351 + Psest_0650 0.63 -1.3 706,351 + Psest_0650 0.63 +0.2 706,352 - Psest_0650 0.63 -2.7 706,492 + +0.5 706,492 + +1.3 706,492 + -0.9 706,492 + -0.3 706,492 + -1.1 706,492 + +0.0 706,492 + +0.8 706,492 + -0.7 706,492 + -0.9 706,492 + -0.5 706,493 - -0.3 706,493 - +2.6 706,493 - +0.3 706,493 - -0.7 706,568 - -0.5 706,712 + +1.3 706,712 + +0.4 706,715 + +1.3 706,715 + -1.9 706,715 + -1.6 706,715 + +0.3 706,716 - +0.9 706,822 - +3.6 706,922 + Psest_0651 0.12 -0.7 706,922 + Psest_0651 0.12 -0.3 706,922 + Psest_0651 0.12 +0.3 706,922 + Psest_0651 0.12 -0.5 706,922 + Psest_0651 0.12 -1.3 706,923 - Psest_0651 0.12 +0.1 706,923 - Psest_0651 0.12 +3.6 706,923 - Psest_0651 0.12 +0.8 706,923 - Psest_0651 0.12 +1.4 706,923 - Psest_0651 0.12 -0.4 706,923 - Psest_0651 0.12 +0.5 706,923 - Psest_0651 0.12 -0.9 706,938 - Psest_0651 0.13 +2.9 707,086 + Psest_0651 0.19 +0.3 707,086 + Psest_0651 0.19 +1.3 707,357 + Psest_0651 0.30 +0.3 707,450 + Psest_0651 0.34 +1.3 707,451 - Psest_0651 0.34 +1.9 707,489 + Psest_0651 0.36 -1.5 707,489 + Psest_0651 0.36 -0.1
Or see this region's nucleotide sequence