Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0607 and Psest_0608 are separated by 92 nucleotides Psest_0608 and Psest_0609 overlap by 4 nucleotides Psest_0609 and Psest_0610 overlap by 90 nucleotides
Psest_0607: Psest_0607 - Co/Zn/Cd efflux system component, at 658,058 to 658,948
_0607
Psest_0608: Psest_0608 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 659,041 to 659,445
_0608
Psest_0609: Psest_0609 - hypothetical protein, at 659,442 to 659,657
_0609
Psest_0610: Psest_0610 - heavy metal sensor kinase, at 659,568 to 660,941
_0610
Position (kb) 659
660 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 658.453 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.467 kb on + strand, within Psest_0607 at 658.575 kb on - strand, within Psest_0607 at 658.580 kb on + strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.587 kb on - strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.607 kb on - strand, within Psest_0607 at 658.739 kb on + strand, within Psest_0607 at 658.740 kb on - strand, within Psest_0607 at 658.849 kb on - strand, within Psest_0607 at 658.892 kb on - strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.005 kb on - strand at 659.005 kb on - strand at 659.058 kb on - strand at 659.066 kb on + strand at 659.066 kb on + strand at 659.067 kb on - strand at 659.067 kb on - strand at 659.069 kb on + strand at 659.069 kb on + strand at 659.070 kb on - strand at 659.070 kb on - strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.155 kb on + strand, within Psest_0608 at 659.181 kb on - strand, within Psest_0608 at 659.245 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.371 kb on - strand, within Psest_0608 at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.533 kb on + strand, within Psest_0609 at 659.533 kb on + strand, within Psest_0609 at 659.697 kb on + strand at 659.697 kb on + strand at 659.697 kb on + strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.825 kb on + strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.966 kb on - strand, within Psest_0610 at 659.966 kb on - strand, within Psest_0610 at 659.966 kb on - strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.974 kb on - strand, within Psest_0610 at 659.994 kb on + strand, within Psest_0610 at 660.000 kb on + strand, within Psest_0610 at 660.001 kb on - strand, within Psest_0610 at 660.001 kb on - strand, within Psest_0610 at 660.165 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.259 kb on - strand, within Psest_0610 at 660.324 kb on + strand, within Psest_0610 at 660.324 kb on + strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.340 kb on - strand, within Psest_0610 at 660.340 kb on - strand, within Psest_0610 at 660.345 kb on - strand, within Psest_0610 at 660.396 kb on + strand, within Psest_0610 at 660.504 kb on + strand, within Psest_0610 at 660.505 kb on - strand, within Psest_0610 at 660.505 kb on - strand, within Psest_0610 at 660.505 kb on - strand, within Psest_0610 at 660.592 kb on + strand, within Psest_0610 at 660.592 kb on + strand, within Psest_0610 at 660.592 kb on + strand, within Psest_0610
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 658,453 - Psest_0607 0.44 -2.8 658,453 - Psest_0607 0.44 +0.2 658,467 + Psest_0607 0.46 -1.1 658,575 - Psest_0607 0.58 -0.5 658,580 + Psest_0607 0.59 -0.1 658,581 - Psest_0607 0.59 -3.4 658,581 - Psest_0607 0.59 +2.4 658,586 + Psest_0607 0.59 +0.6 658,586 + Psest_0607 0.59 +2.6 658,586 + Psest_0607 0.59 +2.3 658,586 + Psest_0607 0.59 +0.8 658,587 - Psest_0607 0.59 -1.4 658,606 + Psest_0607 0.62 -0.0 658,606 + Psest_0607 0.62 -4.9 658,606 + Psest_0607 0.62 -2.4 658,607 - Psest_0607 0.62 +0.7 658,739 + Psest_0607 0.76 -1.5 658,740 - Psest_0607 0.77 +1.6 658,849 - Psest_0607 0.89 -1.4 658,892 - +0.3 658,984 + -0.9 658,984 + -0.9 658,984 + -3.3 658,984 + -0.2 658,985 - +0.4 658,985 - +0.6 658,985 - -0.4 658,985 - -2.9 658,985 - -0.2 658,995 + +0.9 658,995 + +0.2 658,995 + -0.9 658,995 + +0.7 658,995 + -0.4 658,995 + +0.2 658,995 + +1.6 658,995 + -0.0 658,995 + -0.1 658,995 + +0.9 658,996 - +1.7 658,996 - +1.2 658,996 - -0.1 658,996 - +0.2 658,996 - -0.0 658,996 - -3.3 658,996 - -1.2 658,996 - -3.5 658,996 - -1.4 658,996 - -0.6 658,996 - -3.0 658,996 - +0.7 658,996 - +0.6 658,996 - +0.3 658,996 - +0.0 658,999 + -0.5 658,999 + -2.2 658,999 + -2.4 658,999 + +0.6 658,999 + -1.6 658,999 + -2.9 658,999 + -1.6 658,999 + +0.5 658,999 + +0.6 658,999 + -4.1 659,000 - -1.5 659,000 - +1.1 659,000 - -1.3 659,000 - -0.1 659,000 - -0.3 659,000 - +1.5 659,000 - +0.8 659,000 - +0.3 659,002 + -2.3 659,002 + +0.6 659,002 + -0.3 659,002 + -0.0 659,002 + +0.8 659,002 + -2.4 659,002 + +0.1 659,002 + +0.3 659,002 + -1.2 659,002 + -1.0 659,002 + +0.4 659,002 + +0.4 659,003 - -2.7 659,003 - +0.6 659,003 - -0.5 659,003 - +0.3 659,003 - -0.1 659,003 - +0.7 659,003 - -0.0 659,003 - -0.3 659,003 - -0.6 659,003 - -0.0 659,003 - -1.1 659,003 - -0.5 659,003 - -0.7 659,004 + +0.0 659,004 + -3.3 659,004 + +1.0 659,004 + +0.3 659,004 + -0.5 659,004 + -1.4 659,004 + +0.5 659,004 + +0.1 659,004 + -1.0 659,005 - -1.4 659,005 - +2.5 659,058 - +0.0 659,066 + +1.3 659,066 + -1.1 659,067 - +0.3 659,067 - +0.2 659,069 + -0.4 659,069 + -2.5 659,070 - -2.6 659,070 - +0.3 659,079 + -0.3 659,079 + +0.9 659,079 + +0.6 659,079 + -2.0 659,079 + +2.2 659,080 - +0.7 659,080 - -0.9 659,080 - +0.7 659,098 + Psest_0608 0.14 +0.5 659,098 + Psest_0608 0.14 -0.5 659,098 + Psest_0608 0.14 -2.0 659,099 - Psest_0608 0.14 -2.9 659,099 - Psest_0608 0.14 -2.1 659,099 - Psest_0608 0.14 +1.5 659,155 + Psest_0608 0.28 -0.9 659,181 - Psest_0608 0.35 +0.6 659,245 + Psest_0608 0.50 -3.2 659,271 + Psest_0608 0.57 +0.5 659,271 + Psest_0608 0.57 +0.4 659,271 + Psest_0608 0.57 -2.3 659,271 + Psest_0608 0.57 +0.9 659,272 - Psest_0608 0.57 +0.2 659,272 - Psest_0608 0.57 +0.1 659,371 - Psest_0608 0.81 +0.8 659,439 + -0.4 659,439 + +0.5 659,439 + +1.8 659,439 + -0.6 659,439 + +0.7 659,439 + -0.2 659,439 + -4.5 659,439 + -0.3 659,533 + Psest_0609 0.42 -3.5 659,533 + Psest_0609 0.42 -0.9 659,697 + +0.1 659,697 + +0.8 659,697 + +3.1 659,698 - -0.1 659,698 - +1.8 659,698 - -1.5 659,698 - +1.0 659,698 - +2.2 659,698 - -0.0 659,793 + Psest_0610 0.16 +0.7 659,793 + Psest_0610 0.16 +1.0 659,793 + Psest_0610 0.16 -2.9 659,793 + Psest_0610 0.16 -2.2 659,794 - Psest_0610 0.16 +0.6 659,794 - Psest_0610 0.16 +1.0 659,794 - Psest_0610 0.16 +1.4 659,794 - Psest_0610 0.16 +1.5 659,794 - Psest_0610 0.16 -1.7 659,794 - Psest_0610 0.16 +0.4 659,813 + Psest_0610 0.18 -2.7 659,813 + Psest_0610 0.18 -0.9 659,813 + Psest_0610 0.18 +2.7 659,813 + Psest_0610 0.18 +2.6 659,813 + Psest_0610 0.18 +1.0 659,813 + Psest_0610 0.18 -0.5 659,814 - Psest_0610 0.18 +1.8 659,814 - Psest_0610 0.18 +0.7 659,814 - Psest_0610 0.18 -0.2 659,814 - Psest_0610 0.18 +0.0 659,814 - Psest_0610 0.18 +0.6 659,814 - Psest_0610 0.18 +0.1 659,814 - Psest_0610 0.18 -0.0 659,814 - Psest_0610 0.18 +0.4 659,814 - Psest_0610 0.18 +0.4 659,814 - Psest_0610 0.18 +0.6 659,825 + Psest_0610 0.19 -2.0 659,835 - Psest_0610 0.19 -0.4 659,835 - Psest_0610 0.19 +1.1 659,888 + Psest_0610 0.23 +0.4 659,888 + Psest_0610 0.23 +0.4 659,888 + Psest_0610 0.23 -1.1 659,889 - Psest_0610 0.23 +1.4 659,889 - Psest_0610 0.23 -2.7 659,889 - Psest_0610 0.23 +0.5 659,965 + Psest_0610 0.29 -2.6 659,965 + Psest_0610 0.29 -1.3 659,965 + Psest_0610 0.29 +1.2 659,965 + Psest_0610 0.29 +1.2 659,966 - Psest_0610 0.29 -4.5 659,966 - Psest_0610 0.29 +0.1 659,966 - Psest_0610 0.29 -2.1 659,973 + Psest_0610 0.29 -0.9 659,973 + Psest_0610 0.29 +0.2 659,973 + Psest_0610 0.29 -0.2 659,973 + Psest_0610 0.29 -3.7 659,973 + Psest_0610 0.29 +0.4 659,974 - Psest_0610 0.30 -0.1 659,994 + Psest_0610 0.31 +0.2 660,000 + Psest_0610 0.31 +0.6 660,001 - Psest_0610 0.32 +0.7 660,001 - Psest_0610 0.32 -3.4 660,165 + Psest_0610 0.43 -0.1 660,258 + Psest_0610 0.50 +0.0 660,258 + Psest_0610 0.50 -1.5 660,258 + Psest_0610 0.50 -0.9 660,258 + Psest_0610 0.50 -1.3 660,258 + Psest_0610 0.50 -1.5 660,258 + Psest_0610 0.50 -3.3 660,258 + Psest_0610 0.50 -1.1 660,258 + Psest_0610 0.50 +2.6 660,259 - Psest_0610 0.50 -0.0 660,324 + Psest_0610 0.55 -0.7 660,324 + Psest_0610 0.55 -4.2 660,325 - Psest_0610 0.55 -1.1 660,325 - Psest_0610 0.55 -1.2 660,325 - Psest_0610 0.55 +0.2 660,325 - Psest_0610 0.55 -1.2 660,325 - Psest_0610 0.55 +0.7 660,325 - Psest_0610 0.55 -1.0 660,325 - Psest_0610 0.55 -3.9 660,325 - Psest_0610 0.55 -0.6 660,335 + Psest_0610 0.56 -1.8 660,335 + Psest_0610 0.56 +1.4 660,335 + Psest_0610 0.56 +0.8 660,335 + Psest_0610 0.56 +0.8 660,335 + Psest_0610 0.56 -0.7 660,335 + Psest_0610 0.56 +3.0 660,335 + Psest_0610 0.56 -2.2 660,335 + Psest_0610 0.56 +0.3 660,335 + Psest_0610 0.56 +0.3 660,336 - Psest_0610 0.56 -3.7 660,336 - Psest_0610 0.56 +0.9 660,336 - Psest_0610 0.56 -0.0 660,336 - Psest_0610 0.56 -2.2 660,336 - Psest_0610 0.56 +0.1 660,336 - Psest_0610 0.56 +1.7 660,336 - Psest_0610 0.56 +1.3 660,336 - Psest_0610 0.56 -2.3 660,339 + Psest_0610 0.56 -0.6 660,339 + Psest_0610 0.56 +1.6 660,339 + Psest_0610 0.56 -3.7 660,339 + Psest_0610 0.56 -2.4 660,339 + Psest_0610 0.56 -1.3 660,339 + Psest_0610 0.56 +0.0 660,339 + Psest_0610 0.56 +2.1 660,339 + Psest_0610 0.56 +0.1 660,340 - Psest_0610 0.56 +0.0 660,340 - Psest_0610 0.56 +5.0 660,345 - Psest_0610 0.57 -0.2 660,396 + Psest_0610 0.60 +0.9 660,504 + Psest_0610 0.68 -2.0 660,505 - Psest_0610 0.68 -0.5 660,505 - Psest_0610 0.68 -1.1 660,505 - Psest_0610 0.68 -1.5 660,592 + Psest_0610 0.75 -0.3 660,592 + Psest_0610 0.75 -0.6 660,592 + Psest_0610 0.75 -0.6
Or see this region's nucleotide sequence