Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0558

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0557 and Psest_0558 are separated by 116 nucleotidesPsest_0558 and Psest_0559 overlap by 4 nucleotidesPsest_0559 and Psest_0560 are separated by 1 nucleotidesPsest_0560 and Psest_0561 are separated by 131 nucleotides Psest_0557: Psest_0557 - Urease (EC 3.5.1.5) (from data), at 611,093 to 612,793 _0557 Psest_0558: Psest_0558 - urease, beta subunit, at 612,910 to 613,215 _0558 Psest_0559: Psest_0559 - Sortase and related acyltransferases, at 613,212 to 613,775 _0559 Psest_0560: Psest_0560 - Urease (EC 3.5.1.5) (from data), at 613,777 to 614,079 _0560 Psest_0561: Psest_0561 - Urease accessory protein UreH, at 614,211 to 615,044 _0561 Position (kb) 612 613 614Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 611.985 kb on + strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.771 kb on + strandat 612.772 kb on - strandat 613.097 kb on + strand, within Psest_0558at 613.331 kb on + strand, within Psest_0559at 613.331 kb on + strand, within Psest_0559at 613.332 kb on - strand, within Psest_0559at 613.332 kb on - strand, within Psest_0559at 613.462 kb on + strand, within Psest_0559at 613.462 kb on + strand, within Psest_0559at 613.463 kb on - strand, within Psest_0559at 613.526 kb on - strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.673 kb on + strand, within Psest_0559at 613.673 kb on + strand, within Psest_0559at 613.673 kb on + strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.759 kb on + strandat 613.904 kb on + strand, within Psest_0560at 613.966 kb on - strand, within Psest_0560at 613.966 kb on - strand, within Psest_0560at 613.966 kb on - strand, within Psest_0560at 613.966 kb on - strand, within Psest_0560at 613.966 kb on - strand, within Psest_0560at 613.966 kb on - strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.967 kb on + strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.968 kb on - strand, within Psest_0560at 613.986 kb on - strand, within Psest_0560at 614.094 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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611,985 + Psest_0557 0.52 -2.2
611,986 - Psest_0557 0.52 +0.2
611,986 - Psest_0557 0.52 -0.7
611,986 - Psest_0557 0.52 +0.9
611,986 - Psest_0557 0.52 -1.7
612,681 + +0.5
612,681 + +0.8
612,681 + +0.6
612,681 + +1.7
612,681 + -0.5
612,681 + -1.7
612,682 - -1.7
612,682 - -3.0
612,682 - +2.0
612,682 - -2.5
612,682 - -2.0
612,682 - -0.4
612,682 - -0.3
612,682 - +0.3
612,682 - -2.0
612,682 - +1.4
612,771 + +1.3
612,772 - -2.4
613,097 + Psest_0558 0.61 -0.9
613,331 + Psest_0559 0.21 +1.9
613,331 + Psest_0559 0.21 +0.3
613,332 - Psest_0559 0.21 +1.9
613,332 - Psest_0559 0.21 +0.9
613,462 + Psest_0559 0.44 +0.3
613,462 + Psest_0559 0.44 +0.7
613,463 - Psest_0559 0.45 +0.5
613,526 - Psest_0559 0.56 +1.1
613,669 + Psest_0559 0.81 +0.3
613,669 + Psest_0559 0.81 +1.7
613,669 + Psest_0559 0.81 -0.1
613,669 + Psest_0559 0.81 +1.3
613,669 + Psest_0559 0.81 -0.3
613,669 + Psest_0559 0.81 +1.3
613,670 - Psest_0559 0.81 +0.5
613,670 - Psest_0559 0.81 -1.5
613,670 - Psest_0559 0.81 +0.3
613,670 - Psest_0559 0.81 -1.7
613,670 - Psest_0559 0.81 +0.3
613,670 - Psest_0559 0.81 +1.3
613,670 - Psest_0559 0.81 +1.7
613,670 - Psest_0559 0.81 +0.2
613,673 + Psest_0559 0.82 +0.3
613,673 + Psest_0559 0.82 -1.0
613,673 + Psest_0559 0.82 +0.3
613,674 - Psest_0559 0.82 -0.3
613,674 - Psest_0559 0.82 -1.5
613,674 - Psest_0559 0.82 -1.4
613,674 - Psest_0559 0.82 +1.3
613,674 - Psest_0559 0.82 +1.9
613,713 + Psest_0559 0.89 +1.3
613,713 + Psest_0559 0.89 +2.3
613,713 + Psest_0559 0.89 -1.7
613,713 + Psest_0559 0.89 +2.5
613,713 + Psest_0559 0.89 -0.7
613,713 + Psest_0559 0.89 +0.5
613,714 - Psest_0559 0.89 +2.9
613,714 - Psest_0559 0.89 -1.0
613,714 - Psest_0559 0.89 +1.4
613,714 - Psest_0559 0.89 +1.0
613,714 - Psest_0559 0.89 -0.7
613,714 - Psest_0559 0.89 -1.5
613,714 - Psest_0559 0.89 +0.5
613,714 - Psest_0559 0.89 +2.3
613,759 + -1.5
613,904 + Psest_0560 0.42 -0.1
613,966 - Psest_0560 0.62 -0.3
613,966 - Psest_0560 0.62 -2.3
613,966 - Psest_0560 0.62 -1.2
613,966 - Psest_0560 0.62 +0.4
613,966 - Psest_0560 0.62 -1.5
613,966 - Psest_0560 0.62 -0.3
613,967 + Psest_0560 0.63 +0.6
613,967 + Psest_0560 0.63 -1.0
613,967 + Psest_0560 0.63 +0.3
613,967 + Psest_0560 0.63 +2.9
613,967 + Psest_0560 0.63 +0.7
613,967 + Psest_0560 0.63 +0.3
613,967 + Psest_0560 0.63 -0.7
613,967 + Psest_0560 0.63 +0.1
613,967 + Psest_0560 0.63 +0.4
613,967 + Psest_0560 0.63 +2.6
613,967 + Psest_0560 0.63 +2.9
613,967 + Psest_0560 0.63 +0.6
613,967 + Psest_0560 0.63 -0.3
613,968 - Psest_0560 0.63 +1.9
613,968 - Psest_0560 0.63 -0.0
613,968 - Psest_0560 0.63 +0.7
613,968 - Psest_0560 0.63 +0.7
613,968 - Psest_0560 0.63 -0.1
613,968 - Psest_0560 0.63 -1.0
613,968 - Psest_0560 0.63 -0.7
613,968 - Psest_0560 0.63 -0.3
613,968 - Psest_0560 0.63 +0.2
613,968 - Psest_0560 0.63 +0.7
613,968 - Psest_0560 0.63 +2.1
613,986 - Psest_0560 0.69 +0.5
614,094 + -0.9

Or see this region's nucleotide sequence