Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0469

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0467 and Psest_0468 overlap by 1 nucleotidesPsest_0468 and Psest_0469 are separated by 3 nucleotidesPsest_0469 and Psest_0470 are separated by 80 nucleotides Psest_0467: Psest_0467 - lipid A export permease/ATP-binding protein MsbA, at 514,336 to 516,153 _0467 Psest_0468: Psest_0468 - Mig-14., at 516,153 to 517,049 _0468 Psest_0469: Psest_0469 - Uncharacterized proteins, LmbE homologs, at 517,053 to 518,447 _0469 Psest_0470: Psest_0470 - rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II, at 518,528 to 519,949 _0470 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1at 518.445 kb on + strandat 518.445 kb on + strandat 518.445 kb on + strandat 518.446 kb on - strandat 518.446 kb on - strandat 518.446 kb on - strandat 518.489 kb on + strandat 518.489 kb on + strandat 518.489 kb on + strandat 518.490 kb on - strandat 518.490 kb on - strandat 518.492 kb on + strandat 518.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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518,445 + +0.3
518,445 + +1.3
518,445 + -0.7
518,446 - +0.3
518,446 - +0.4
518,446 - -2.7
518,489 + -0.9
518,489 + +1.3
518,489 + -2.7
518,490 - +1.0
518,490 - +1.7
518,492 + +1.7
518,492 + +0.3

Or see this region's nucleotide sequence