Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00260

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00240 and PGA1_78p00250 are separated by 92 nucleotidesPGA1_78p00250 and PGA1_78p00260 are separated by 165 nucleotidesPGA1_78p00260 and PGA1_78p00270 are separated by 36 nucleotides PGA1_78p00240: PGA1_78p00240 - Uncharacterized protein conserved in bacteria, at 27,819 to 30,284 _78p00240 PGA1_78p00250: PGA1_78p00250 - putative HTH-type transcriptional regulator, at 30,377 to 30,988 _78p00250 PGA1_78p00260: PGA1_78p00260 - dihydrolipoyl dehydrogenase LpdA, at 31,154 to 32,536 _78p00260 PGA1_78p00270: PGA1_78p00270 - lipoyl synthase LipA, at 32,573 to 33,541 _78p00270 Position (kb) 31 32 33Strain fitness (log2 ratio) -1 0 1at 30.437 kb on + strandat 30.644 kb on - strand, within PGA1_78p00250at 30.644 kb on - strand, within PGA1_78p00250at 30.689 kb on - strand, within PGA1_78p00250at 30.919 kb on + strand, within PGA1_78p00250at 31.115 kb on + strandat 31.315 kb on + strand, within PGA1_78p00260at 31.644 kb on + strand, within PGA1_78p00260at 32.242 kb on - strand, within PGA1_78p00260at 32.564 kb on - strandat 33.155 kb on + strand, within PGA1_78p00270at 33.351 kb on - strand, within PGA1_78p00270at 33.366 kb on + strand, within PGA1_78p00270at 33.374 kb on - strand, within PGA1_78p00270at 33.434 kb on + strand, within PGA1_78p00270at 33.434 kb on + strand, within PGA1_78p00270at 33.442 kb on - strand, within PGA1_78p00270at 33.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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30,437 + +0.1
30,644 - PGA1_78p00250 0.44 +0.8
30,644 - PGA1_78p00250 0.44 +1.2
30,689 - PGA1_78p00250 0.51 +1.6
30,919 + PGA1_78p00250 0.89 +0.3
31,115 + -0.1
31,315 + PGA1_78p00260 0.12 +0.2
31,644 + PGA1_78p00260 0.35 -0.5
32,242 - PGA1_78p00260 0.79 -0.4
32,564 - +1.4
33,155 + PGA1_78p00270 0.60 +0.8
33,351 - PGA1_78p00270 0.80 +0.7
33,366 + PGA1_78p00270 0.82 -0.3
33,374 - PGA1_78p00270 0.83 -0.0
33,434 + PGA1_78p00270 0.89 +0.4
33,434 + PGA1_78p00270 0.89 +0.1
33,442 - PGA1_78p00270 0.90 +1.3
33,511 + +1.1

Or see this region's nucleotide sequence