Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3796

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3795 and Psest_3796 are separated by 58 nucleotidesPsest_3796 and Psest_3797 are separated by 157 nucleotidesPsest_3797 and Psest_3798 are separated by 6 nucleotides Psest_3795: Psest_3795 - Glycine/D-amino acid oxidases (deaminating), at 3,963,639 to 3,964,973 _3795 Psest_3796: Psest_3796 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 3,965,032 to 3,966,579 _3796 Psest_3797: Psest_3797 - hypothetical protein, at 3,966,737 to 3,967,480 _3797 Psest_3798: Psest_3798 - Predicted membrane protein, at 3,967,487 to 3,968,011 _3798 Position (kb) 3965 3966 3967Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3964.111 kb on - strand, within Psest_3795at 3964.340 kb on - strand, within Psest_3795at 3964.402 kb on - strand, within Psest_3795at 3964.455 kb on + strand, within Psest_3795at 3964.455 kb on + strand, within Psest_3795at 3964.455 kb on + strand, within Psest_3795at 3964.455 kb on + strand, within Psest_3795at 3964.455 kb on + strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.456 kb on - strand, within Psest_3795at 3964.457 kb on + strand, within Psest_3795at 3964.457 kb on + strand, within Psest_3795at 3964.458 kb on - strand, within Psest_3795at 3964.458 kb on - strand, within Psest_3795at 3964.548 kb on + strand, within Psest_3795at 3964.548 kb on + strand, within Psest_3795at 3964.548 kb on + strand, within Psest_3795at 3964.548 kb on + strand, within Psest_3795at 3964.633 kb on - strand, within Psest_3795at 3964.633 kb on - strand, within Psest_3795at 3964.633 kb on - strand, within Psest_3795at 3964.770 kb on + strand, within Psest_3795at 3964.770 kb on + strand, within Psest_3795at 3964.770 kb on + strand, within Psest_3795at 3964.770 kb on + strand, within Psest_3795at 3964.771 kb on - strand, within Psest_3795at 3964.771 kb on - strand, within Psest_3795at 3964.783 kb on - strand, within Psest_3795at 3965.041 kb on + strandat 3965.041 kb on + strandat 3965.041 kb on + strandat 3965.041 kb on + strandat 3965.042 kb on - strandat 3965.042 kb on - strandat 3965.198 kb on + strand, within Psest_3796at 3965.272 kb on + strand, within Psest_3796at 3965.272 kb on + strand, within Psest_3796at 3965.272 kb on + strand, within Psest_3796at 3965.272 kb on + strand, within Psest_3796at 3965.272 kb on + strand, within Psest_3796at 3965.273 kb on - strand, within Psest_3796at 3965.273 kb on - strand, within Psest_3796at 3965.273 kb on - strand, within Psest_3796at 3965.273 kb on - strand, within Psest_3796at 3965.273 kb on - strand, within Psest_3796at 3965.273 kb on - strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.275 kb on + strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.276 kb on - strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.279 kb on + strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.280 kb on - strand, within Psest_3796at 3965.475 kb on + strand, within Psest_3796at 3965.594 kb on - strand, within Psest_3796at 3965.594 kb on - strand, within Psest_3796at 3965.686 kb on + strand, within Psest_3796at 3965.782 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.836 kb on + strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.837 kb on - strand, within Psest_3796at 3965.990 kb on + strand, within Psest_3796at 3965.990 kb on + strand, within Psest_3796at 3965.991 kb on - strand, within Psest_3796at 3965.991 kb on - strand, within Psest_3796at 3966.019 kb on + strand, within Psest_3796at 3966.049 kb on + strand, within Psest_3796at 3966.050 kb on - strand, within Psest_3796at 3966.050 kb on - strand, within Psest_3796at 3966.050 kb on - strand, within Psest_3796at 3966.087 kb on + strand, within Psest_3796at 3966.087 kb on + strand, within Psest_3796at 3966.088 kb on - strand, within Psest_3796at 3966.220 kb on + strand, within Psest_3796at 3966.220 kb on + strand, within Psest_3796at 3966.220 kb on + strand, within Psest_3796at 3966.282 kb on + strand, within Psest_3796at 3966.283 kb on - strand, within Psest_3796at 3966.283 kb on - strand, within Psest_3796at 3966.390 kb on + strand, within Psest_3796at 3966.422 kb on - strand, within Psest_3796at 3966.422 kb on - strand, within Psest_3796at 3966.428 kb on + strandat 3966.428 kb on + strandat 3966.429 kb on - strandat 3966.631 kb on + strandat 3966.632 kb on - strandat 3966.704 kb on + strandat 3966.705 kb on - strandat 3966.705 kb on - strandat 3966.705 kb on - strandat 3966.705 kb on - strandat 3966.705 kb on - strandat 3966.712 kb on - strandat 3966.712 kb on - strandat 3966.762 kb on + strandat 3966.780 kb on + strandat 3967.037 kb on + strand, within Psest_3797at 3967.163 kb on + strand, within Psest_3797at 3967.179 kb on - strand, within Psest_3797at 3967.194 kb on - strand, within Psest_3797at 3967.194 kb on - strand, within Psest_3797at 3967.194 kb on - strand, within Psest_3797at 3967.194 kb on - strand, within Psest_3797at 3967.235 kb on + strand, within Psest_3797at 3967.235 kb on + strand, within Psest_3797at 3967.235 kb on + strand, within Psest_3797at 3967.236 kb on - strand, within Psest_3797at 3967.236 kb on - strand, within Psest_3797at 3967.236 kb on - strand, within Psest_3797at 3967.236 kb on - strand, within Psest_3797at 3967.354 kb on - strand, within Psest_3797

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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3,964,111 - Psest_3795 0.35 +0.7
3,964,340 - Psest_3795 0.53 +0.1
3,964,402 - Psest_3795 0.57 -0.3
3,964,455 + Psest_3795 0.61 -1.5
3,964,455 + Psest_3795 0.61 +0.5
3,964,455 + Psest_3795 0.61 -1.0
3,964,455 + Psest_3795 0.61 +0.3
3,964,455 + Psest_3795 0.61 +1.6
3,964,456 - Psest_3795 0.61 -0.7
3,964,456 - Psest_3795 0.61 -1.3
3,964,456 - Psest_3795 0.61 +1.3
3,964,456 - Psest_3795 0.61 +2.0
3,964,456 - Psest_3795 0.61 +2.1
3,964,456 - Psest_3795 0.61 -1.0
3,964,456 - Psest_3795 0.61 -0.4
3,964,456 - Psest_3795 0.61 -0.1
3,964,456 - Psest_3795 0.61 +0.3
3,964,456 - Psest_3795 0.61 -1.9
3,964,457 + Psest_3795 0.61 +0.7
3,964,457 + Psest_3795 0.61 -2.0
3,964,458 - Psest_3795 0.61 +3.1
3,964,458 - Psest_3795 0.61 +0.7
3,964,548 + Psest_3795 0.68 +2.3
3,964,548 + Psest_3795 0.68 +0.6
3,964,548 + Psest_3795 0.68 +0.4
3,964,548 + Psest_3795 0.68 -1.5
3,964,633 - Psest_3795 0.74 -1.6
3,964,633 - Psest_3795 0.74 +1.0
3,964,633 - Psest_3795 0.74 -1.3
3,964,770 + Psest_3795 0.85 -0.7
3,964,770 + Psest_3795 0.85 +0.1
3,964,770 + Psest_3795 0.85 -0.3
3,964,770 + Psest_3795 0.85 +1.9
3,964,771 - Psest_3795 0.85 -2.0
3,964,771 - Psest_3795 0.85 -0.0
3,964,783 - Psest_3795 0.86 -1.3
3,965,041 + -3.0
3,965,041 + +0.2
3,965,041 + +1.5
3,965,041 + +1.3
3,965,042 - +1.8
3,965,042 - +0.2
3,965,198 + Psest_3796 0.11 +1.0
3,965,272 + Psest_3796 0.16 +0.8
3,965,272 + Psest_3796 0.16 +0.5
3,965,272 + Psest_3796 0.16 -0.7
3,965,272 + Psest_3796 0.16 -0.0
3,965,272 + Psest_3796 0.16 +0.8
3,965,273 - Psest_3796 0.16 -1.3
3,965,273 - Psest_3796 0.16 +0.7
3,965,273 - Psest_3796 0.16 +1.1
3,965,273 - Psest_3796 0.16 -3.1
3,965,273 - Psest_3796 0.16 +0.8
3,965,273 - Psest_3796 0.16 -1.5
3,965,275 + Psest_3796 0.16 -0.4
3,965,275 + Psest_3796 0.16 -2.3
3,965,275 + Psest_3796 0.16 -0.1
3,965,275 + Psest_3796 0.16 +1.2
3,965,275 + Psest_3796 0.16 +1.7
3,965,275 + Psest_3796 0.16 -1.7
3,965,275 + Psest_3796 0.16 -1.9
3,965,275 + Psest_3796 0.16 -0.3
3,965,275 + Psest_3796 0.16 -1.3
3,965,275 + Psest_3796 0.16 -0.0
3,965,275 + Psest_3796 0.16 +0.4
3,965,275 + Psest_3796 0.16 +1.7
3,965,275 + Psest_3796 0.16 +2.2
3,965,275 + Psest_3796 0.16 +2.1
3,965,275 + Psest_3796 0.16 -1.5
3,965,275 + Psest_3796 0.16 +0.6
3,965,275 + Psest_3796 0.16 +1.3
3,965,275 + Psest_3796 0.16 +0.2
3,965,275 + Psest_3796 0.16 +0.6
3,965,275 + Psest_3796 0.16 -1.8
3,965,275 + Psest_3796 0.16 -0.4
3,965,275 + Psest_3796 0.16 -0.9
3,965,275 + Psest_3796 0.16 +1.5
3,965,276 - Psest_3796 0.16 +0.3
3,965,276 - Psest_3796 0.16 -1.3
3,965,276 - Psest_3796 0.16 -1.0
3,965,276 - Psest_3796 0.16 -1.3
3,965,276 - Psest_3796 0.16 +0.6
3,965,276 - Psest_3796 0.16 -1.8
3,965,276 - Psest_3796 0.16 +0.6
3,965,276 - Psest_3796 0.16 +0.3
3,965,279 + Psest_3796 0.16 +0.4
3,965,279 + Psest_3796 0.16 +0.9
3,965,279 + Psest_3796 0.16 -0.7
3,965,279 + Psest_3796 0.16 -0.1
3,965,279 + Psest_3796 0.16 +1.4
3,965,279 + Psest_3796 0.16 +0.0
3,965,279 + Psest_3796 0.16 +2.5
3,965,279 + Psest_3796 0.16 +0.8
3,965,279 + Psest_3796 0.16 +0.5
3,965,279 + Psest_3796 0.16 +1.4
3,965,279 + Psest_3796 0.16 +0.2
3,965,279 + Psest_3796 0.16 -1.0
3,965,279 + Psest_3796 0.16 -0.7
3,965,279 + Psest_3796 0.16 -0.1
3,965,279 + Psest_3796 0.16 +0.5
3,965,279 + Psest_3796 0.16 -1.1
3,965,279 + Psest_3796 0.16 +0.4
3,965,279 + Psest_3796 0.16 +0.2
3,965,279 + Psest_3796 0.16 +0.4
3,965,279 + Psest_3796 0.16 +0.3
3,965,279 + Psest_3796 0.16 -2.6
3,965,279 + Psest_3796 0.16 +0.1
3,965,280 - Psest_3796 0.16 -0.1
3,965,280 - Psest_3796 0.16 -1.5
3,965,280 - Psest_3796 0.16 -0.3
3,965,280 - Psest_3796 0.16 -1.5
3,965,280 - Psest_3796 0.16 +1.3
3,965,280 - Psest_3796 0.16 -2.0
3,965,280 - Psest_3796 0.16 -1.3
3,965,280 - Psest_3796 0.16 -1.7
3,965,280 - Psest_3796 0.16 -0.4
3,965,280 - Psest_3796 0.16 -0.4
3,965,280 - Psest_3796 0.16 -0.7
3,965,280 - Psest_3796 0.16 +1.0
3,965,280 - Psest_3796 0.16 +0.6
3,965,280 - Psest_3796 0.16 +0.6
3,965,475 + Psest_3796 0.29 -0.4
3,965,594 - Psest_3796 0.36 -1.5
3,965,594 - Psest_3796 0.36 -0.5
3,965,686 + Psest_3796 0.42 -0.1
3,965,782 + Psest_3796 0.48 +1.1
3,965,836 + Psest_3796 0.52 -0.3
3,965,836 + Psest_3796 0.52 -0.7
3,965,836 + Psest_3796 0.52 +0.9
3,965,836 + Psest_3796 0.52 +1.9
3,965,836 + Psest_3796 0.52 -0.6
3,965,836 + Psest_3796 0.52 -1.0
3,965,836 + Psest_3796 0.52 -0.9
3,965,836 + Psest_3796 0.52 +1.6
3,965,836 + Psest_3796 0.52 +3.0
3,965,837 - Psest_3796 0.52 -0.3
3,965,837 - Psest_3796 0.52 +0.3
3,965,837 - Psest_3796 0.52 +0.0
3,965,837 - Psest_3796 0.52 -2.0
3,965,837 - Psest_3796 0.52 -2.5
3,965,837 - Psest_3796 0.52 -0.0
3,965,837 - Psest_3796 0.52 -2.5
3,965,837 - Psest_3796 0.52 +0.1
3,965,990 + Psest_3796 0.62 -1.0
3,965,990 + Psest_3796 0.62 +1.0
3,965,991 - Psest_3796 0.62 +0.3
3,965,991 - Psest_3796 0.62 -1.2
3,966,019 + Psest_3796 0.64 -0.7
3,966,049 + Psest_3796 0.66 -1.4
3,966,050 - Psest_3796 0.66 +1.0
3,966,050 - Psest_3796 0.66 -0.9
3,966,050 - Psest_3796 0.66 -1.7
3,966,087 + Psest_3796 0.68 -1.0
3,966,087 + Psest_3796 0.68 +0.1
3,966,088 - Psest_3796 0.68 +1.1
3,966,220 + Psest_3796 0.77 -2.2
3,966,220 + Psest_3796 0.77 +1.0
3,966,220 + Psest_3796 0.77 +0.7
3,966,282 + Psest_3796 0.81 +0.8
3,966,283 - Psest_3796 0.81 -1.9
3,966,283 - Psest_3796 0.81 +0.8
3,966,390 + Psest_3796 0.88 +0.1
3,966,422 - Psest_3796 0.90 +2.3
3,966,422 - Psest_3796 0.90 +0.7
3,966,428 + -0.8
3,966,428 + -0.7
3,966,429 - +0.0
3,966,631 + -1.7
3,966,632 - -1.0
3,966,704 + +1.3
3,966,705 - +0.2
3,966,705 - +0.5
3,966,705 - +0.5
3,966,705 - +1.1
3,966,705 - +1.5
3,966,712 - +2.6
3,966,712 - -3.7
3,966,762 + +1.0
3,966,780 + -0.7
3,967,037 + Psest_3797 0.40 +1.3
3,967,163 + Psest_3797 0.57 -0.3
3,967,179 - Psest_3797 0.59 -0.0
3,967,194 - Psest_3797 0.61 +1.0
3,967,194 - Psest_3797 0.61 +0.3
3,967,194 - Psest_3797 0.61 -1.3
3,967,194 - Psest_3797 0.61 -0.4
3,967,235 + Psest_3797 0.67 +0.5
3,967,235 + Psest_3797 0.67 -2.0
3,967,235 + Psest_3797 0.67 -0.2
3,967,236 - Psest_3797 0.67 -0.9
3,967,236 - Psest_3797 0.67 -1.2
3,967,236 - Psest_3797 0.67 +0.4
3,967,236 - Psest_3797 0.67 +0.4
3,967,354 - Psest_3797 0.83 +0.5

Or see this region's nucleotide sequence