Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0370

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0369 and Psest_0370 are separated by 35 nucleotidesPsest_0370 and Psest_0371 are separated by 10 nucleotidesPsest_0371 and Psest_0372 are separated by 67 nucleotides Psest_0369: Psest_0369 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 394,968 to 396,110 _0369 Psest_0370: Psest_0370 - Uncharacterized protein conserved in bacteria, at 396,146 to 397,666 _0370 Psest_0371: Psest_0371 - hypothetical protein, at 397,677 to 398,171 _0371 Psest_0372: Psest_0372 - Uncharacterized protein conserved in bacteria, at 398,239 to 399,219 _0372 Position (kb) 396 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 395.151 kb on + strand, within Psest_0369at 395.151 kb on + strand, within Psest_0369at 395.181 kb on + strand, within Psest_0369at 395.182 kb on - strand, within Psest_0369at 395.182 kb on - strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.915 kb on + strand, within Psest_0369at 396.198 kb on + strandat 396.335 kb on - strand, within Psest_0370at 396.344 kb on + strand, within Psest_0370at 396.344 kb on + strand, within Psest_0370at 396.531 kb on + strand, within Psest_0370at 396.531 kb on + strand, within Psest_0370at 396.532 kb on - strand, within Psest_0370at 396.588 kb on + strand, within Psest_0370at 396.588 kb on + strand, within Psest_0370at 396.588 kb on + strand, within Psest_0370at 396.589 kb on - strand, within Psest_0370at 396.589 kb on - strand, within Psest_0370at 396.589 kb on - strand, within Psest_0370at 396.589 kb on - strand, within Psest_0370at 396.589 kb on - strand, within Psest_0370at 396.780 kb on + strand, within Psest_0370at 396.781 kb on - strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.820 kb on - strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.460 kb on - strand, within Psest_0370at 397.655 kb on + strandat 397.655 kb on + strandat 397.655 kb on + strandat 397.655 kb on + strandat 397.656 kb on - strandat 397.656 kb on - strandat 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.828 kb on + strand, within Psest_0371at 397.828 kb on + strand, within Psest_0371at 397.829 kb on - strand, within Psest_0371at 397.829 kb on - strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.968 kb on + strand, within Psest_0371at 398.085 kb on + strand, within Psest_0371at 398.086 kb on - strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.108 kb on - strand, within Psest_0371at 398.108 kb on - strand, within Psest_0371at 398.134 kb on - strandat 398.134 kb on - strandat 398.240 kb on + strandat 398.240 kb on + strandat 398.241 kb on - strandat 398.241 kb on - strandat 398.241 kb on - strandat 398.327 kb on + strandat 398.328 kb on - strandat 398.330 kb on + strandat 398.369 kb on + strand, within Psest_0372at 398.456 kb on + strand, within Psest_0372at 398.456 kb on + strand, within Psest_0372at 398.457 kb on - strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.592 kb on - strand, within Psest_0372at 398.592 kb on - strand, within Psest_0372

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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395,151 + Psest_0369 0.16 +0.7
395,151 + Psest_0369 0.16 +1.3
395,181 + Psest_0369 0.19 -2.2
395,182 - Psest_0369 0.19 -0.3
395,182 - Psest_0369 0.19 +0.5
395,406 + Psest_0369 0.38 -0.1
395,406 + Psest_0369 0.38 +0.2
395,406 + Psest_0369 0.38 +0.9
395,406 + Psest_0369 0.38 -1.0
395,406 + Psest_0369 0.38 -1.1
395,406 + Psest_0369 0.38 -0.7
395,407 - Psest_0369 0.38 +1.3
395,407 - Psest_0369 0.38 +1.3
395,407 - Psest_0369 0.38 +1.3
395,407 - Psest_0369 0.38 -1.3
395,407 - Psest_0369 0.38 +0.3
395,915 + Psest_0369 0.83 +0.5
396,198 + -0.7
396,335 - Psest_0370 0.12 -1.9
396,344 + Psest_0370 0.13 +2.6
396,344 + Psest_0370 0.13 -2.3
396,531 + Psest_0370 0.25 -1.7
396,531 + Psest_0370 0.25 +0.8
396,532 - Psest_0370 0.25 +0.6
396,588 + Psest_0370 0.29 -0.7
396,588 + Psest_0370 0.29 +0.0
396,588 + Psest_0370 0.29 -0.7
396,589 - Psest_0370 0.29 +0.6
396,589 - Psest_0370 0.29 +2.3
396,589 - Psest_0370 0.29 -2.1
396,589 - Psest_0370 0.29 -0.3
396,589 - Psest_0370 0.29 +0.3
396,780 + Psest_0370 0.42 -3.7
396,781 - Psest_0370 0.42 +1.3
396,819 + Psest_0370 0.44 -0.9
396,819 + Psest_0370 0.44 -1.9
396,819 + Psest_0370 0.44 -2.6
396,819 + Psest_0370 0.44 +0.1
396,819 + Psest_0370 0.44 -1.1
396,819 + Psest_0370 0.44 +0.7
396,819 + Psest_0370 0.44 -1.2
396,819 + Psest_0370 0.44 -0.7
396,819 + Psest_0370 0.44 -1.9
396,820 - Psest_0370 0.44 -0.3
397,233 + Psest_0370 0.71 +0.5
397,233 + Psest_0370 0.71 -0.2
397,233 + Psest_0370 0.71 -1.9
397,233 + Psest_0370 0.71 -1.5
397,233 + Psest_0370 0.71 +1.0
397,233 + Psest_0370 0.71 -2.8
397,234 - Psest_0370 0.72 +1.3
397,234 - Psest_0370 0.72 +0.6
397,234 - Psest_0370 0.72 -2.2
397,460 - Psest_0370 0.86 -1.2
397,655 + -1.1
397,655 + +0.9
397,655 + +0.9
397,655 + -0.7
397,656 - -0.3
397,656 - +2.0
397,738 + Psest_0371 0.12 -1.1
397,738 + Psest_0371 0.12 -2.3
397,738 + Psest_0371 0.12 +2.3
397,738 + Psest_0371 0.12 -1.3
397,738 + Psest_0371 0.12 -1.7
397,738 + Psest_0371 0.12 -0.7
397,739 - Psest_0371 0.13 +0.8
397,739 - Psest_0371 0.13 +1.1
397,739 - Psest_0371 0.13 -0.3
397,739 - Psest_0371 0.13 +0.8
397,739 - Psest_0371 0.13 +0.0
397,739 - Psest_0371 0.13 +0.6
397,739 - Psest_0371 0.13 +0.3
397,739 - Psest_0371 0.13 -0.0
397,739 - Psest_0371 0.13 +0.0
397,739 - Psest_0371 0.13 +1.4
397,739 - Psest_0371 0.13 +0.3
397,739 - Psest_0371 0.13 +0.3
397,739 - Psest_0371 0.13 +1.3
397,828 + Psest_0371 0.31 +1.4
397,828 + Psest_0371 0.31 -0.1
397,829 - Psest_0371 0.31 -1.7
397,829 - Psest_0371 0.31 -0.7
397,834 + Psest_0371 0.32 +0.3
397,834 + Psest_0371 0.32 +0.6
397,834 + Psest_0371 0.32 -0.7
397,835 - Psest_0371 0.32 +0.3
397,835 - Psest_0371 0.32 -0.6
397,835 - Psest_0371 0.32 +1.2
397,882 + Psest_0371 0.41 +1.9
397,882 + Psest_0371 0.41 -1.9
397,882 + Psest_0371 0.41 +0.1
397,883 - Psest_0371 0.42 +0.5
397,883 - Psest_0371 0.42 +0.8
397,883 - Psest_0371 0.42 +0.3
397,968 + Psest_0371 0.59 +0.3
398,085 + Psest_0371 0.82 +1.0
398,086 - Psest_0371 0.83 +0.3
398,107 + Psest_0371 0.87 +0.4
398,107 + Psest_0371 0.87 +1.1
398,107 + Psest_0371 0.87 +1.3
398,108 - Psest_0371 0.87 +1.3
398,108 - Psest_0371 0.87 -1.1
398,134 - +0.9
398,134 - +0.9
398,240 + +0.3
398,240 + +0.5
398,241 - +1.3
398,241 - +0.0
398,241 - -0.7
398,327 + +0.9
398,328 - -0.7
398,330 + -0.2
398,369 + Psest_0372 0.13 -0.3
398,456 + Psest_0372 0.22 +1.1
398,456 + Psest_0372 0.22 -0.7
398,457 - Psest_0372 0.22 -0.7
398,573 + Psest_0372 0.34 -0.7
398,573 + Psest_0372 0.34 -0.3
398,573 + Psest_0372 0.34 -0.1
398,573 + Psest_0372 0.34 -0.3
398,573 + Psest_0372 0.34 -0.3
398,573 + Psest_0372 0.34 +0.7
398,574 - Psest_0372 0.34 +0.8
398,574 - Psest_0372 0.34 -0.8
398,574 - Psest_0372 0.34 +0.8
398,574 - Psest_0372 0.34 -1.5
398,574 - Psest_0372 0.34 -0.8
398,591 + Psest_0372 0.36 +1.2
398,591 + Psest_0372 0.36 +2.3
398,591 + Psest_0372 0.36 +1.5
398,592 - Psest_0372 0.36 +1.6
398,592 - Psest_0372 0.36 +0.3

Or see this region's nucleotide sequence