Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00430 and PGA1_262p00440 are separated by 118 nucleotides PGA1_262p00440 and PGA1_262p00450 overlap by 4 nucleotides PGA1_262p00450 and PGA1_262p00460 are separated by 122 nucleotides
PGA1_262p00430: PGA1_262p00430 - glucose transporter, periplasmic substrate-binding component <small>(from data)</small>, at 51,827 to 52,852
_262p00430
PGA1_262p00440: PGA1_262p00440 - glucose transporter, permease component <small>(from data)</small>, at 52,971 to 54,272
_262p00440
PGA1_262p00450: PGA1_262p00450 - glucose transporter, ATPase component <small>(from data)</small>, at 54,269 to 55,051
_262p00450
PGA1_262p00460: PGA1_262p00460 - transcriptional regulator, MerR family, at 55,174 to 55,602
_262p00460
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 51.989 kb on + strand, within PGA1_262p00430 at 51.997 kb on - strand, within PGA1_262p00430 at 52.107 kb on - strand, within PGA1_262p00430 at 52.270 kb on + strand, within PGA1_262p00430 at 52.375 kb on + strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.426 kb on - strand, within PGA1_262p00430 at 52.697 kb on + strand, within PGA1_262p00430 at 52.913 kb on - strand at 52.953 kb on + strand at 52.992 kb on - strand at 53.006 kb on + strand at 53.014 kb on - strand at 53.142 kb on - strand, within PGA1_262p00440 at 53.189 kb on - strand, within PGA1_262p00440 at 53.234 kb on + strand, within PGA1_262p00440 at 53.253 kb on - strand, within PGA1_262p00440 at 53.301 kb on + strand, within PGA1_262p00440 at 53.546 kb on + strand, within PGA1_262p00440 at 53.613 kb on + strand, within PGA1_262p00440 at 53.671 kb on + strand, within PGA1_262p00440 at 53.767 kb on - strand, within PGA1_262p00440 at 53.972 kb on + strand, within PGA1_262p00440 at 53.982 kb on - strand, within PGA1_262p00440 at 54.029 kb on + strand, within PGA1_262p00440 at 54.266 kb on + strand at 54.274 kb on - strand at 54.356 kb on + strand, within PGA1_262p00450 at 54.379 kb on + strand, within PGA1_262p00450 at 54.379 kb on + strand, within PGA1_262p00450 at 54.387 kb on - strand, within PGA1_262p00450 at 54.816 kb on + strand, within PGA1_262p00450 at 54.970 kb on + strand, within PGA1_262p00450 at 55.208 kb on + strand at 55.208 kb on + strand at 55.232 kb on + strand, within PGA1_262p00460 at 55.232 kb on + strand, within PGA1_262p00460 at 55.232 kb on + strand, within PGA1_262p00460 at 55.240 kb on - strand, within PGA1_262p00460 at 55.263 kb on + strand, within PGA1_262p00460
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 51,989 + PGA1_262p00430 0.16 -0.4 51,997 - PGA1_262p00430 0.17 -0.7 52,107 - PGA1_262p00430 0.27 -1.6 52,270 + PGA1_262p00430 0.43 -0.6 52,375 + PGA1_262p00430 0.53 -2.0 52,383 - PGA1_262p00430 0.54 -3.7 52,383 - PGA1_262p00430 0.54 -1.3 52,383 - PGA1_262p00430 0.54 -3.4 52,383 - PGA1_262p00430 0.54 +0.0 52,426 - PGA1_262p00430 0.58 -1.1 52,697 + PGA1_262p00430 0.85 -2.6 52,913 - -2.3 52,953 + -1.9 52,992 - -1.9 53,006 + -1.8 53,014 - -1.5 53,142 - PGA1_262p00440 0.13 +0.8 53,189 - PGA1_262p00440 0.17 -1.7 53,234 + PGA1_262p00440 0.20 -2.2 53,253 - PGA1_262p00440 0.22 -2.0 53,301 + PGA1_262p00440 0.25 -1.1 53,546 + PGA1_262p00440 0.44 -2.7 53,613 + PGA1_262p00440 0.49 -1.4 53,671 + PGA1_262p00440 0.54 -2.2 53,767 - PGA1_262p00440 0.61 -0.7 53,972 + PGA1_262p00440 0.77 -2.4 53,982 - PGA1_262p00440 0.78 -2.2 54,029 + PGA1_262p00440 0.81 -1.4 54,266 + -1.2 54,274 - +0.2 54,356 + PGA1_262p00450 0.11 -1.4 54,379 + PGA1_262p00450 0.14 +0.4 54,379 + PGA1_262p00450 0.14 -1.9 54,387 - PGA1_262p00450 0.15 +0.4 54,816 + PGA1_262p00450 0.70 -1.2 54,970 + PGA1_262p00450 0.90 -0.2 55,208 + -0.1 55,208 + -1.8 55,232 + PGA1_262p00460 0.14 -0.4 55,232 + PGA1_262p00460 0.14 -0.7 55,232 + PGA1_262p00460 0.14 +0.6 55,240 - PGA1_262p00460 0.15 +0.2 55,263 + PGA1_262p00460 0.21 +0.4
Or see this region's nucleotide sequence