Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3681

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3679 and Psest_3680 are separated by 196 nucleotidesPsest_3680 and Psest_3681 are separated by 138 nucleotidesPsest_3681 and Psest_3682 are separated by 67 nucleotides Psest_3679: Psest_3679 - putative glycoprotease GCP, at 3,842,900 to 3,843,925 _3679 Psest_3680: Psest_3680 - ribosomal protein S21, at 3,844,122 to 3,844,337 _3680 Psest_3681: Psest_3681 - DNA primase, catalytic core, at 3,844,476 to 3,846,419 _3681 Psest_3682: Psest_3682 - RNA polymerase sigma factor, sigma-70 family, at 3,846,487 to 3,848,340 _3682 Position (kb) 3844 3845 3846 3847Strain fitness (log2 ratio) -1 0 1at 3844.396 kb on + strandat 3844.461 kb on + strandat 3846.425 kb on + strandat 3846.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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3,844,396 + +1.3
3,844,461 + +1.2
3,846,425 + +0.2
3,846,434 + -0.0

Or see this region's nucleotide sequence