Strain Fitness in Marinobacter adhaerens HP15 around HP15_3481

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3478 and HP15_3480 are separated by 9 nucleotidesHP15_3480 and HP15_3479 overlap by 2 nucleotidesHP15_3479 and HP15_3481 are separated by 140 nucleotidesHP15_3481 and HP15_3482 are separated by 302 nucleotidesHP15_3482 and HP15_3483 are separated by 17 nucleotides HP15_3478: HP15_3478 - integron integrase-like protein, at 3,666,135 to 3,666,452 _3478 HP15_3480: HP15_3480 - conserved hypothetical protein, at 3,666,462 to 3,666,746 _3480 HP15_3479: HP15_3479 - secreted protein, at 3,666,745 to 3,666,882 _3479 HP15_3481: HP15_3481 - transcription elongation factor GreB, at 3,667,023 to 3,667,538 _3481 HP15_3482: HP15_3482 - conserved hypothetical protein, at 3,667,841 to 3,668,122 _3482 HP15_3483: HP15_3483 - two-component, sensor histidine kinase, at 3,668,140 to 3,669,552 _3483 Position (kb) 3667 3668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3666.040 kb on + strandat 3666.081 kb on - strandat 3666.083 kb on + strandat 3666.151 kb on + strandat 3666.159 kb on - strandat 3666.161 kb on + strandat 3666.161 kb on + strandat 3666.185 kb on + strand, within HP15_3478at 3666.185 kb on + strand, within HP15_3478at 3666.185 kb on + strand, within HP15_3478at 3666.245 kb on - strand, within HP15_3478at 3666.304 kb on - strand, within HP15_3478at 3666.378 kb on - strand, within HP15_3478at 3666.512 kb on - strand, within HP15_3480at 3666.553 kb on - strand, within HP15_3480at 3666.600 kb on + strand, within HP15_3480at 3666.600 kb on + strand, within HP15_3480at 3666.608 kb on - strand, within HP15_3480at 3666.640 kb on - strand, within HP15_3480at 3666.791 kb on + strand, within HP15_3479at 3666.804 kb on - strand, within HP15_3479at 3666.876 kb on + strandat 3666.876 kb on + strandat 3666.876 kb on + strandat 3666.884 kb on - strandat 3666.907 kb on + strandat 3666.909 kb on - strandat 3666.913 kb on + strandat 3667.158 kb on + strand, within HP15_3481at 3667.168 kb on - strand, within HP15_3481at 3667.293 kb on + strand, within HP15_3481at 3667.417 kb on + strand, within HP15_3481at 3667.417 kb on + strand, within HP15_3481at 3667.425 kb on - strand, within HP15_3481at 3667.615 kb on + strandat 3667.623 kb on - strandat 3667.781 kb on - strandat 3667.786 kb on + strandat 3667.794 kb on - strandat 3667.799 kb on - strandat 3667.807 kb on - strandat 3667.883 kb on + strand, within HP15_3482at 3667.944 kb on - strand, within HP15_3482at 3667.972 kb on - strand, within HP15_3482at 3668.003 kb on - strand, within HP15_3482at 3668.082 kb on - strand, within HP15_3482

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,666,040 + -0.0
3,666,081 - -0.2
3,666,083 + +1.0
3,666,151 + +1.0
3,666,159 - -0.0
3,666,161 + +2.8
3,666,161 + +0.0
3,666,185 + HP15_3478 0.16 +0.1
3,666,185 + HP15_3478 0.16 -0.3
3,666,185 + HP15_3478 0.16 -0.2
3,666,245 - HP15_3478 0.35 +0.3
3,666,304 - HP15_3478 0.53 +1.1
3,666,378 - HP15_3478 0.76 -0.1
3,666,512 - HP15_3480 0.18 -1.0
3,666,553 - HP15_3480 0.32 -0.1
3,666,600 + HP15_3480 0.48 +1.3
3,666,600 + HP15_3480 0.48 +0.6
3,666,608 - HP15_3480 0.51 -0.3
3,666,640 - HP15_3480 0.62 +0.8
3,666,791 + HP15_3479 0.33 +0.2
3,666,804 - HP15_3479 0.43 -0.2
3,666,876 + +0.2
3,666,876 + +1.2
3,666,876 + +1.1
3,666,884 - +2.4
3,666,907 + +0.3
3,666,909 - +0.9
3,666,913 + -0.7
3,667,158 + HP15_3481 0.26 -0.3
3,667,168 - HP15_3481 0.28 -0.7
3,667,293 + HP15_3481 0.52 -0.4
3,667,417 + HP15_3481 0.76 -1.8
3,667,417 + HP15_3481 0.76 -0.1
3,667,425 - HP15_3481 0.78 +0.5
3,667,615 + +0.3
3,667,623 - -0.3
3,667,781 - -0.7
3,667,786 + -0.5
3,667,794 - +0.5
3,667,799 - +1.2
3,667,807 - +1.1
3,667,883 + HP15_3482 0.15 +1.2
3,667,944 - HP15_3482 0.37 +1.0
3,667,972 - HP15_3482 0.46 -0.2
3,668,003 - HP15_3482 0.57 -0.4
3,668,082 - HP15_3482 0.85 -0.2

Or see this region's nucleotide sequence