Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3478 and HP15_3480 are separated by 9 nucleotides HP15_3480 and HP15_3479 overlap by 2 nucleotides HP15_3479 and HP15_3481 are separated by 140 nucleotides HP15_3481 and HP15_3482 are separated by 302 nucleotides HP15_3482 and HP15_3483 are separated by 17 nucleotides
HP15_3478: HP15_3478 - integron integrase-like protein, at 3,666,135 to 3,666,452
_3478
HP15_3480: HP15_3480 - conserved hypothetical protein, at 3,666,462 to 3,666,746
_3480
HP15_3479: HP15_3479 - secreted protein, at 3,666,745 to 3,666,882
_3479
HP15_3481: HP15_3481 - transcription elongation factor GreB, at 3,667,023 to 3,667,538
_3481
HP15_3482: HP15_3482 - conserved hypothetical protein, at 3,667,841 to 3,668,122
_3482
HP15_3483: HP15_3483 - two-component, sensor histidine kinase, at 3,668,140 to 3,669,552
_3483
Position (kb)
3667
3668 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3666.040 kb on + strand at 3666.081 kb on - strand at 3666.083 kb on + strand at 3666.151 kb on + strand at 3666.159 kb on - strand at 3666.161 kb on + strand at 3666.161 kb on + strand at 3666.185 kb on + strand, within HP15_3478 at 3666.185 kb on + strand, within HP15_3478 at 3666.185 kb on + strand, within HP15_3478 at 3666.245 kb on - strand, within HP15_3478 at 3666.304 kb on - strand, within HP15_3478 at 3666.378 kb on - strand, within HP15_3478 at 3666.512 kb on - strand, within HP15_3480 at 3666.553 kb on - strand, within HP15_3480 at 3666.600 kb on + strand, within HP15_3480 at 3666.600 kb on + strand, within HP15_3480 at 3666.608 kb on - strand, within HP15_3480 at 3666.640 kb on - strand, within HP15_3480 at 3666.791 kb on + strand, within HP15_3479 at 3666.804 kb on - strand, within HP15_3479 at 3666.876 kb on + strand at 3666.876 kb on + strand at 3666.876 kb on + strand at 3666.884 kb on - strand at 3666.907 kb on + strand at 3666.909 kb on - strand at 3666.913 kb on + strand at 3667.158 kb on + strand, within HP15_3481 at 3667.168 kb on - strand, within HP15_3481 at 3667.293 kb on + strand, within HP15_3481 at 3667.417 kb on + strand, within HP15_3481 at 3667.417 kb on + strand, within HP15_3481 at 3667.425 kb on - strand, within HP15_3481 at 3667.615 kb on + strand at 3667.623 kb on - strand at 3667.781 kb on - strand at 3667.786 kb on + strand at 3667.794 kb on - strand at 3667.799 kb on - strand at 3667.807 kb on - strand at 3667.883 kb on + strand, within HP15_3482 at 3667.944 kb on - strand, within HP15_3482 at 3667.972 kb on - strand, within HP15_3482 at 3668.003 kb on - strand, within HP15_3482 at 3668.082 kb on - strand, within HP15_3482
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,666,040 + -0.0 3,666,081 - -0.2 3,666,083 + +1.0 3,666,151 + +1.0 3,666,159 - -0.0 3,666,161 + +2.8 3,666,161 + +0.0 3,666,185 + HP15_3478 0.16 +0.1 3,666,185 + HP15_3478 0.16 -0.3 3,666,185 + HP15_3478 0.16 -0.2 3,666,245 - HP15_3478 0.35 +0.3 3,666,304 - HP15_3478 0.53 +1.1 3,666,378 - HP15_3478 0.76 -0.1 3,666,512 - HP15_3480 0.18 -1.0 3,666,553 - HP15_3480 0.32 -0.1 3,666,600 + HP15_3480 0.48 +1.3 3,666,600 + HP15_3480 0.48 +0.6 3,666,608 - HP15_3480 0.51 -0.3 3,666,640 - HP15_3480 0.62 +0.8 3,666,791 + HP15_3479 0.33 +0.2 3,666,804 - HP15_3479 0.43 -0.2 3,666,876 + +0.2 3,666,876 + +1.2 3,666,876 + +1.1 3,666,884 - +2.4 3,666,907 + +0.3 3,666,909 - +0.9 3,666,913 + -0.7 3,667,158 + HP15_3481 0.26 -0.3 3,667,168 - HP15_3481 0.28 -0.7 3,667,293 + HP15_3481 0.52 -0.4 3,667,417 + HP15_3481 0.76 -1.8 3,667,417 + HP15_3481 0.76 -0.1 3,667,425 - HP15_3481 0.78 +0.5 3,667,615 + +0.3 3,667,623 - -0.3 3,667,781 - -0.7 3,667,786 + -0.5 3,667,794 - +0.5 3,667,799 - +1.2 3,667,807 - +1.1 3,667,883 + HP15_3482 0.15 +1.2 3,667,944 - HP15_3482 0.37 +1.0 3,667,972 - HP15_3482 0.46 -0.2 3,668,003 - HP15_3482 0.57 -0.4 3,668,082 - HP15_3482 0.85 -0.2
Or see this region's nucleotide sequence