Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35510

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35490 and PGA1_c35500 are separated by 41 nucleotidesPGA1_c35500 and PGA1_c35510 are separated by 29 nucleotidesPGA1_c35510 and PGA1_c35520 are separated by 10 nucleotides PGA1_c35490: PGA1_c35490 - putative O-sialoglycoprotein endopeptidase, at 3,719,668 to 3,720,765 _c35490 PGA1_c35500: PGA1_c35500 - uoporphyrinogen-III synthase HemD-like protein, at 3,720,807 to 3,721,574 _c35500 PGA1_c35510: PGA1_c35510 - hypothetical protein, at 3,721,604 to 3,722,986 _c35510 PGA1_c35520: PGA1_c35520 - HemY-like protein, at 3,722,997 to 3,724,520 _c35520 Position (kb) 3721 3722 3723Strain fitness (log2 ratio) -2 -1 0 1at 3720.767 kb on - strandat 3720.803 kb on + strandat 3720.804 kb on + strandat 3720.804 kb on + strandat 3720.809 kb on - strandat 3720.823 kb on + strandat 3720.825 kb on + strandat 3720.831 kb on - strandat 3720.840 kb on - strandat 3721.535 kb on - strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.547 kb on + strandat 3721.555 kb on - strandat 3721.555 kb on - strandat 3721.593 kb on - strandat 3721.618 kb on - strandat 3721.865 kb on + strand, within PGA1_c35510at 3721.969 kb on + strand, within PGA1_c35510at 3722.356 kb on + strand, within PGA1_c35510at 3722.751 kb on + strand, within PGA1_c35510at 3722.929 kb on - strandat 3723.112 kb on - strandat 3723.119 kb on + strandat 3723.164 kb on - strand, within PGA1_c35520at 3723.253 kb on + strand, within PGA1_c35520at 3723.341 kb on + strand, within PGA1_c35520at 3723.575 kb on + strand, within PGA1_c35520at 3723.591 kb on + strand, within PGA1_c35520at 3723.665 kb on + strand, within PGA1_c35520at 3723.714 kb on + strand, within PGA1_c35520at 3723.714 kb on + strand, within PGA1_c35520at 3723.839 kb on + strand, within PGA1_c35520at 3723.915 kb on + strand, within PGA1_c35520at 3723.915 kb on + strand, within PGA1_c35520at 3723.923 kb on - strand, within PGA1_c35520

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,720,767 - -0.4
3,720,803 + +0.3
3,720,804 + -0.0
3,720,804 + -0.4
3,720,809 - +0.8
3,720,823 + +0.6
3,720,825 + +0.2
3,720,831 - +0.4
3,720,840 - -0.7
3,721,535 - +0.5
3,721,547 + +0.8
3,721,547 + -0.5
3,721,547 + +0.0
3,721,547 + -0.7
3,721,547 + -0.4
3,721,547 + +0.6
3,721,547 + +0.2
3,721,547 + +0.5
3,721,547 + +0.5
3,721,547 + +0.4
3,721,547 + -0.5
3,721,547 + -0.8
3,721,547 + -0.4
3,721,547 + +1.0
3,721,547 + +0.6
3,721,547 + +0.2
3,721,547 + +0.5
3,721,547 + +0.4
3,721,555 - -0.2
3,721,555 - +0.3
3,721,593 - +0.3
3,721,618 - +0.0
3,721,865 + PGA1_c35510 0.19 -0.5
3,721,969 + PGA1_c35510 0.26 -0.2
3,722,356 + PGA1_c35510 0.54 -0.1
3,722,751 + PGA1_c35510 0.83 -2.0
3,722,929 - -1.1
3,723,112 - +0.2
3,723,119 + -0.5
3,723,164 - PGA1_c35520 0.11 -1.6
3,723,253 + PGA1_c35520 0.17 -0.2
3,723,341 + PGA1_c35520 0.23 -0.5
3,723,575 + PGA1_c35520 0.38 -2.6
3,723,591 + PGA1_c35520 0.39 -1.5
3,723,665 + PGA1_c35520 0.44 -0.5
3,723,714 + PGA1_c35520 0.47 -2.2
3,723,714 + PGA1_c35520 0.47 -2.3
3,723,839 + PGA1_c35520 0.55 -0.8
3,723,915 + PGA1_c35520 0.60 -0.6
3,723,915 + PGA1_c35520 0.60 -0.9
3,723,923 - PGA1_c35520 0.61 -1.0

Or see this region's nucleotide sequence