Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3255 and HP15_3256 are separated by 789 nucleotides HP15_3256 and HP15_3257 are separated by 47 nucleotides HP15_3257 and HP15_3258 overlap by 26 nucleotides HP15_3258 and HP15_3259 are separated by 114 nucleotides
HP15_3255: HP15_3255 - mercuric ion reductase, at 3,409,274 to 3,410,716
_3255
HP15_3256: HP15_3256 - phospho-2-dehydro-3-heoxyheptonate aldolase, at 3,411,506 to 3,412,558
_3256
HP15_3257: HP15_3257 - hypothetical protein, at 3,412,606 to 3,412,719
_3257
HP15_3258: HP15_3258 - hypothetical protein, at 3,412,694 to 3,412,804
_3258
HP15_3259: HP15_3259 - NolW domain protein, at 3,412,919 to 3,413,707
_3259
Position (kb)
3411
3412
3413 Strain fitness (log2 ratio)
-2
-1
0
1 at 3410.564 kb on + strand, within HP15_3255 at 3410.577 kb on - strand at 3410.623 kb on - strand at 3410.703 kb on - strand at 3410.723 kb on - strand at 3410.783 kb on + strand at 3410.791 kb on - strand at 3410.868 kb on + strand at 3410.940 kb on + strand at 3410.989 kb on - strand at 3410.989 kb on - strand at 3411.134 kb on + strand at 3411.134 kb on - strand at 3411.277 kb on + strand at 3411.312 kb on - strand at 3411.369 kb on - strand at 3411.369 kb on - strand at 3411.518 kb on + strand at 3411.526 kb on - strand at 3411.744 kb on + strand, within HP15_3256 at 3412.344 kb on + strand, within HP15_3256 at 3412.520 kb on - strand at 3412.898 kb on + strand at 3412.906 kb on - strand at 3412.944 kb on - strand at 3412.963 kb on - strand at 3412.999 kb on - strand, within HP15_3259 at 3413.054 kb on + strand, within HP15_3259 at 3413.062 kb on - strand, within HP15_3259 at 3413.248 kb on - strand, within HP15_3259 at 3413.361 kb on + strand, within HP15_3259
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,410,564 + HP15_3255 0.89 -0.2 3,410,577 - -1.8 3,410,623 - +1.1 3,410,703 - +1.0 3,410,723 - +1.2 3,410,783 + -0.0 3,410,791 - +0.9 3,410,868 + -0.4 3,410,940 + +1.0 3,410,989 - -0.6 3,410,989 - -0.8 3,411,134 + +0.8 3,411,134 - +1.0 3,411,277 + +0.0 3,411,312 - -0.9 3,411,369 - +1.0 3,411,369 - +1.5 3,411,518 + +0.9 3,411,526 - -0.6 3,411,744 + HP15_3256 0.23 +0.6 3,412,344 + HP15_3256 0.80 +1.5 3,412,520 - -0.2 3,412,898 + -0.2 3,412,906 - +0.4 3,412,944 - -1.0 3,412,963 - -0.4 3,412,999 - HP15_3259 0.10 -0.7 3,413,054 + HP15_3259 0.17 -0.5 3,413,062 - HP15_3259 0.18 +1.5 3,413,248 - HP15_3259 0.42 -0.1 3,413,361 + HP15_3259 0.56 +1.1
Or see this region's nucleotide sequence