Strain Fitness in Marinobacter adhaerens HP15 around HP15_3256

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3255 and HP15_3256 are separated by 789 nucleotidesHP15_3256 and HP15_3257 are separated by 47 nucleotidesHP15_3257 and HP15_3258 overlap by 26 nucleotidesHP15_3258 and HP15_3259 are separated by 114 nucleotides HP15_3255: HP15_3255 - mercuric ion reductase, at 3,409,274 to 3,410,716 _3255 HP15_3256: HP15_3256 - phospho-2-dehydro-3-heoxyheptonate aldolase, at 3,411,506 to 3,412,558 _3256 HP15_3257: HP15_3257 - hypothetical protein, at 3,412,606 to 3,412,719 _3257 HP15_3258: HP15_3258 - hypothetical protein, at 3,412,694 to 3,412,804 _3258 HP15_3259: HP15_3259 - NolW domain protein, at 3,412,919 to 3,413,707 _3259 Position (kb) 3411 3412 3413Strain fitness (log2 ratio) -2 -1 0 1at 3410.564 kb on + strand, within HP15_3255at 3410.577 kb on - strandat 3410.623 kb on - strandat 3410.703 kb on - strandat 3410.723 kb on - strandat 3410.783 kb on + strandat 3410.791 kb on - strandat 3410.868 kb on + strandat 3410.940 kb on + strandat 3410.989 kb on - strandat 3410.989 kb on - strandat 3411.134 kb on + strandat 3411.134 kb on - strandat 3411.277 kb on + strandat 3411.312 kb on - strandat 3411.369 kb on - strandat 3411.369 kb on - strandat 3411.518 kb on + strandat 3411.526 kb on - strandat 3411.744 kb on + strand, within HP15_3256at 3412.344 kb on + strand, within HP15_3256at 3412.520 kb on - strandat 3412.898 kb on + strandat 3412.906 kb on - strandat 3412.944 kb on - strandat 3412.963 kb on - strandat 3412.999 kb on - strand, within HP15_3259at 3413.054 kb on + strand, within HP15_3259at 3413.062 kb on - strand, within HP15_3259at 3413.248 kb on - strand, within HP15_3259at 3413.361 kb on + strand, within HP15_3259

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,410,564 + HP15_3255 0.89 -0.2
3,410,577 - -1.8
3,410,623 - +1.1
3,410,703 - +1.0
3,410,723 - +1.2
3,410,783 + -0.0
3,410,791 - +0.9
3,410,868 + -0.4
3,410,940 + +1.0
3,410,989 - -0.6
3,410,989 - -0.8
3,411,134 + +0.8
3,411,134 - +1.0
3,411,277 + +0.0
3,411,312 - -0.9
3,411,369 - +1.0
3,411,369 - +1.5
3,411,518 + +0.9
3,411,526 - -0.6
3,411,744 + HP15_3256 0.23 +0.6
3,412,344 + HP15_3256 0.80 +1.5
3,412,520 - -0.2
3,412,898 + -0.2
3,412,906 - +0.4
3,412,944 - -1.0
3,412,963 - -0.4
3,412,999 - HP15_3259 0.10 -0.7
3,413,054 + HP15_3259 0.17 -0.5
3,413,062 - HP15_3259 0.18 +1.5
3,413,248 - HP15_3259 0.42 -0.1
3,413,361 + HP15_3259 0.56 +1.1

Or see this region's nucleotide sequence