Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0318

Experiment: methylglyoxal 0.0016 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0316 and Psest_0317 are separated by 9 nucleotidesPsest_0317 and Psest_0318 are separated by 60 nucleotidesPsest_0318 and Psest_0319 are separated by 93 nucleotides Psest_0316: Psest_0316 - Cytochrome c556, at 339,459 to 339,905 _0316 Psest_0317: Psest_0317 - Protein of unknown function (DUF1090)., at 339,915 to 340,295 _0317 Psest_0318: Psest_0318 - NAD-dependent DNA ligase (contains BRCT domain type II), at 340,356 to 342,020 _0318 Psest_0319: Psest_0319 - Predicted ferric reductase, at 342,114 to 343,445 _0319 Position (kb) 340 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 339.425 kb on - strandat 339.503 kb on - strandat 339.503 kb on - strandat 339.561 kb on + strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.562 kb on - strand, within Psest_0316at 339.916 kb on + strandat 339.917 kb on - strandat 340.032 kb on + strand, within Psest_0317at 340.055 kb on - strand, within Psest_0317at 340.308 kb on + strandat 340.308 kb on + strandat 340.308 kb on + strandat 340.308 kb on + strandat 340.309 kb on - strandat 340.309 kb on - strandat 340.309 kb on - strandat 340.327 kb on - strandat 340.371 kb on - strandat 340.371 kb on - strandat 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.910 kb on + strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.911 kb on - strand, within Psest_0318at 340.974 kb on + strand, within Psest_0318at 341.102 kb on + strand, within Psest_0318at 341.102 kb on + strand, within Psest_0318at 341.102 kb on + strand, within Psest_0318at 341.103 kb on - strand, within Psest_0318at 341.114 kb on - strand, within Psest_0318at 341.114 kb on - strand, within Psest_0318at 341.114 kb on - strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318at 341.229 kb on + strand, within Psest_0318at 341.598 kb on - strand, within Psest_0318at 341.598 kb on - strand, within Psest_0318at 341.884 kb on + strandat 341.885 kb on - strandat 341.885 kb on - strandat 342.122 kb on + strandat 342.122 kb on + strandat 342.122 kb on + strandat 342.123 kb on - strandat 342.297 kb on + strand, within Psest_0319at 342.376 kb on + strand, within Psest_0319at 342.377 kb on - strand, within Psest_0319at 342.424 kb on - strand, within Psest_0319at 342.569 kb on - strand, within Psest_0319at 342.720 kb on - strand, within Psest_0319at 342.897 kb on + strand, within Psest_0319at 342.898 kb on - strand, within Psest_0319at 342.898 kb on - strand, within Psest_0319at 342.898 kb on - strand, within Psest_0319at 342.898 kb on - strand, within Psest_0319at 342.925 kb on + strand, within Psest_0319at 342.925 kb on + strand, within Psest_0319at 342.926 kb on - strand, within Psest_0319at 342.926 kb on - strand, within Psest_0319at 342.926 kb on - strand, within Psest_0319at 343.016 kb on - strand, within Psest_0319

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
remove
339,425 - -0.2
339,503 - +0.5
339,503 - +0.9
339,561 + Psest_0316 0.23 +1.3
339,562 - Psest_0316 0.23 -0.1
339,562 - Psest_0316 0.23 -1.3
339,562 - Psest_0316 0.23 -2.0
339,916 + -0.4
339,917 - -1.5
340,032 + Psest_0317 0.31 -0.3
340,055 - Psest_0317 0.37 -1.7
340,308 + +0.3
340,308 + +1.5
340,308 + -0.3
340,308 + -1.3
340,309 - +0.8
340,309 - +1.3
340,309 - +0.9
340,327 - -1.9
340,371 - +2.3
340,371 - -0.1
340,910 + Psest_0318 0.33 +2.3
340,910 + Psest_0318 0.33 +1.3
340,910 + Psest_0318 0.33 -0.3
340,910 + Psest_0318 0.33 -0.3
340,910 + Psest_0318 0.33 -1.1
340,910 + Psest_0318 0.33 +0.7
340,910 + Psest_0318 0.33 +0.0
340,910 + Psest_0318 0.33 -0.3
340,910 + Psest_0318 0.33 -1.3
340,910 + Psest_0318 0.33 +0.3
340,910 + Psest_0318 0.33 +1.9
340,910 + Psest_0318 0.33 -0.1
340,910 + Psest_0318 0.33 +0.3
340,910 + Psest_0318 0.33 -0.7
340,910 + Psest_0318 0.33 +1.9
340,911 - Psest_0318 0.33 +0.9
340,911 - Psest_0318 0.33 -1.1
340,911 - Psest_0318 0.33 +0.3
340,911 - Psest_0318 0.33 +0.8
340,911 - Psest_0318 0.33 +0.9
340,911 - Psest_0318 0.33 +0.7
340,911 - Psest_0318 0.33 -0.3
340,911 - Psest_0318 0.33 -0.7
340,974 + Psest_0318 0.37 -0.1
341,102 + Psest_0318 0.45 +0.7
341,102 + Psest_0318 0.45 -1.1
341,102 + Psest_0318 0.45 +0.3
341,103 - Psest_0318 0.45 +2.3
341,114 - Psest_0318 0.46 +1.3
341,114 - Psest_0318 0.46 +0.0
341,114 - Psest_0318 0.46 +1.3
341,229 + Psest_0318 0.52 +0.3
341,229 + Psest_0318 0.52 -1.7
341,229 + Psest_0318 0.52 +2.3
341,229 + Psest_0318 0.52 -0.6
341,598 - Psest_0318 0.75 +1.3
341,598 - Psest_0318 0.75 +0.3
341,884 + -0.3
341,885 - +0.7
341,885 - +1.3
342,122 + -2.3
342,122 + -0.6
342,122 + +1.0
342,123 - -1.3
342,297 + Psest_0319 0.14 -1.5
342,376 + Psest_0319 0.20 -1.3
342,377 - Psest_0319 0.20 +2.5
342,424 - Psest_0319 0.23 -0.3
342,569 - Psest_0319 0.34 +0.8
342,720 - Psest_0319 0.45 +0.1
342,897 + Psest_0319 0.59 -1.9
342,898 - Psest_0319 0.59 +0.3
342,898 - Psest_0319 0.59 -0.7
342,898 - Psest_0319 0.59 +0.8
342,898 - Psest_0319 0.59 +0.5
342,925 + Psest_0319 0.61 +1.0
342,925 + Psest_0319 0.61 +0.7
342,926 - Psest_0319 0.61 +0.5
342,926 - Psest_0319 0.61 -1.9
342,926 - Psest_0319 0.61 +1.6
343,016 - Psest_0319 0.68 +0.2

Or see this region's nucleotide sequence