Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0027 and Psest_0028 are separated by 152 nucleotides Psest_0028 and Psest_0029 are separated by 43 nucleotides Psest_0029 and Psest_0030 overlap by 4 nucleotides
Psest_0027: Psest_0027 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 27,653 to 28,630
_0027
Psest_0028: Psest_0028 - Coproporphyrinogen III oxidase, at 28,783 to 29,700
_0028
Psest_0029: Psest_0029 - shikimate 5-dehydrogenase, at 29,744 to 30,556
_0029
Psest_0030: Psest_0030 - Putative NADH-flavin reductase, at 30,553 to 31,164
_0030
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 27.825 kb on + strand, within Psest_0027 at 27.990 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.066 kb on + strand, within Psest_0027 at 28.243 kb on - strand, within Psest_0027 at 28.243 kb on - strand, within Psest_0027 at 28.372 kb on - strand, within Psest_0027 at 28.477 kb on - strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.495 kb on - strand, within Psest_0027 at 28.495 kb on - strand, within Psest_0027 at 28.703 kb on + strand at 28.703 kb on + strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.750 kb on - strand at 28.813 kb on + strand at 28.813 kb on + strand at 28.813 kb on + strand at 29.086 kb on + strand, within Psest_0028 at 29.087 kb on - strand, within Psest_0028 at 29.186 kb on - strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.503 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.524 kb on + strand, within Psest_0028 at 29.611 kb on + strand at 29.660 kb on - strand at 29.660 kb on - strand at 30.550 kb on + strand at 30.550 kb on + strand at 30.551 kb on - strand at 30.551 kb on - strand at 30.554 kb on + strand at 30.625 kb on - strand, within Psest_0030
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 27,825 + Psest_0027 0.18 +2.3 27,990 + Psest_0027 0.34 +1.3 28,040 + Psest_0027 0.40 -1.1 28,040 + Psest_0027 0.40 +1.3 28,040 + Psest_0027 0.40 -0.7 28,040 + Psest_0027 0.40 -1.3 28,040 + Psest_0027 0.40 -0.7 28,041 - Psest_0027 0.40 -0.3 28,041 - Psest_0027 0.40 +0.9 28,041 - Psest_0027 0.40 -1.0 28,041 - Psest_0027 0.40 -0.7 28,041 - Psest_0027 0.40 -0.7 28,041 - Psest_0027 0.40 +2.6 28,041 - Psest_0027 0.40 -0.9 28,041 - Psest_0027 0.40 +0.3 28,041 - Psest_0027 0.40 +0.3 28,041 - Psest_0027 0.40 +0.3 28,041 - Psest_0027 0.40 +1.3 28,066 + Psest_0027 0.42 +2.3 28,243 - Psest_0027 0.60 +0.8 28,243 - Psest_0027 0.60 +1.3 28,372 - Psest_0027 0.74 +0.7 28,477 - Psest_0027 0.84 +4.1 28,494 + Psest_0027 0.86 +2.7 28,494 + Psest_0027 0.86 +0.1 28,494 + Psest_0027 0.86 -1.7 28,494 + Psest_0027 0.86 -1.0 28,494 + Psest_0027 0.86 +4.5 28,495 - Psest_0027 0.86 +0.5 28,495 - Psest_0027 0.86 +2.3 28,703 + -0.4 28,703 + +0.5 28,704 - -0.7 28,704 - +1.9 28,704 - -0.3 28,704 - +1.3 28,704 - +0.3 28,750 - -1.5 28,813 + -1.1 28,813 + -1.0 28,813 + +0.7 29,086 + Psest_0028 0.33 -2.0 29,087 - Psest_0028 0.33 -1.0 29,186 - Psest_0028 0.44 -0.3 29,410 + Psest_0028 0.68 -0.7 29,410 + Psest_0028 0.68 -0.3 29,410 + Psest_0028 0.68 -1.7 29,503 + Psest_0028 0.78 -0.3 29,512 + Psest_0028 0.79 -2.0 29,512 + Psest_0028 0.79 +0.3 29,512 + Psest_0028 0.79 -0.0 29,513 - Psest_0028 0.80 -1.0 29,513 - Psest_0028 0.80 -0.3 29,513 - Psest_0028 0.80 -0.3 29,513 - Psest_0028 0.80 -1.9 29,513 - Psest_0028 0.80 -1.1 29,513 - Psest_0028 0.80 -1.5 29,524 + Psest_0028 0.81 +0.7 29,611 + +0.5 29,660 - -1.0 29,660 - -0.3 30,550 + -0.0 30,550 + +1.1 30,551 - +1.3 30,551 - +2.3 30,554 + -0.3 30,625 - Psest_0030 0.12 +0.7
Or see this region's nucleotide sequence