Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0260 and Psest_0261 are separated by 112 nucleotides Psest_0261 and Psest_0262 are separated by 83 nucleotides
Psest_0260: Psest_0260 - Cell division protein, at 274,524 to 275,543
_0260
Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510
_0261
Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164
_0262
Position (kb) 275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 275.283 kb on + strand, within Psest_0260 at 275.284 kb on - strand, within Psest_0260 at 275.304 kb on + strand, within Psest_0260 at 275.305 kb on - strand, within Psest_0260 at 275.491 kb on + strand at 275.491 kb on + strand at 275.492 kb on - strand at 275.622 kb on + strand at 275.622 kb on + strand at 275.622 kb on + strand at 276.524 kb on - strand at 276.642 kb on + strand at 276.747 kb on - strand at 276.841 kb on + strand at 276.923 kb on + strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 277.176 kb on + strand, within Psest_0262 at 277.234 kb on - strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 275,283 + Psest_0260 0.74 -2.2 275,284 - Psest_0260 0.75 +0.3 275,304 + Psest_0260 0.76 +0.3 275,305 - Psest_0260 0.77 -0.3 275,491 + -0.5 275,491 + +2.5 275,492 - -2.8 275,622 + +1.2 275,622 + +0.8 275,622 + -0.3 276,524 - +2.2 276,642 + -1.2 276,747 - -3.0 276,841 + +1.7 276,923 + Psest_0262 0.13 +0.4 276,924 - Psest_0262 0.13 -3.3 276,924 - Psest_0262 0.13 -0.5 276,924 - Psest_0262 0.13 +0.4 276,924 - Psest_0262 0.13 +1.3 276,924 - Psest_0262 0.13 +0.4 276,924 - Psest_0262 0.13 -3.2 277,176 + Psest_0262 0.23 +0.8 277,234 - Psest_0262 0.25 +0.6 277,386 + Psest_0262 0.31 +0.4 277,386 + Psest_0262 0.31 -2.1 277,386 + Psest_0262 0.31 -0.1 277,387 - Psest_0262 0.31 -2.2 277,387 - Psest_0262 0.31 -1.5 277,387 - Psest_0262 0.31 +0.3 277,387 - Psest_0262 0.31 -0.1 277,387 - Psest_0262 0.31 +1.7 277,387 - Psest_0262 0.31 -0.0 277,387 - Psest_0262 0.31 -1.3
Or see this region's nucleotide sequence