Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0257

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0256 and Psest_0257 overlap by 8 nucleotidesPsest_0257 and Psest_0258 are separated by 229 nucleotides Psest_0256: Psest_0256 - Predicted Zn-dependent peptidases, at 269,463 to 271,004 _0256 Psest_0257: Psest_0257 - Predicted Zn-dependent peptidases, at 270,997 to 272,349 _0257 Psest_0258: Psest_0258 - signal recognition particle-docking protein FtsY, at 272,579 to 273,859 _0258 Position (kb) 270 271 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 271.024 kb on + strandat 271.024 kb on + strandat 271.024 kb on + strandat 271.024 kb on + strandat 271.024 kb on + strandat 271.025 kb on - strandat 271.025 kb on - strandat 271.025 kb on - strandat 271.025 kb on - strandat 271.025 kb on - strandat 271.025 kb on - strandat 271.025 kb on - strandat 271.025 kb on - strandat 271.058 kb on + strandat 271.059 kb on - strandat 271.276 kb on + strand, within Psest_0257at 271.731 kb on - strand, within Psest_0257at 271.850 kb on + strand, within Psest_0257at 272.181 kb on - strand, within Psest_0257at 272.350 kb on - strandat 272.350 kb on - strandat 272.459 kb on + strandat 272.512 kb on + strandat 272.512 kb on + strandat 272.512 kb on + strandat 272.517 kb on + strandat 272.552 kb on + strandat 272.569 kb on + strandat 272.569 kb on + strandat 272.569 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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271,024 + -0.9
271,024 + -2.3
271,024 + +1.5
271,024 + -0.7
271,024 + -0.5
271,025 - -1.7
271,025 - -1.9
271,025 - -0.9
271,025 - +0.1
271,025 - +0.7
271,025 - -0.4
271,025 - +0.4
271,025 - -1.4
271,058 + +0.9
271,059 - -1.7
271,276 + Psest_0257 0.21 -0.8
271,731 - Psest_0257 0.54 -0.3
271,850 + Psest_0257 0.63 +0.9
272,181 - Psest_0257 0.88 -0.3
272,350 - -0.3
272,350 - -0.0
272,459 + -0.3
272,512 + -2.3
272,512 + -1.2
272,512 + +0.7
272,517 + -4.0
272,552 + +3.0
272,569 + +0.3
272,569 + +1.3
272,569 + +2.4

Or see this region's nucleotide sequence