Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23510

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23500 and PGA1_c23510 are separated by 45 nucleotidesPGA1_c23510 and PGA1_c23520 are separated by 157 nucleotides PGA1_c23500: PGA1_c23500 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 2,447,079 to 2,449,319 _c23500 PGA1_c23510: PGA1_c23510 - aspartokinase LysC, at 2,449,365 to 2,450,603 _c23510 PGA1_c23520: PGA1_c23520 - trk system potassium uptake protein, at 2,450,761 to 2,452,209 _c23520 Position (kb) 2449 2450 2451Strain fitness (log2 ratio) -1 0 1 2 3 4at 2448.365 kb on - strand, within PGA1_c23500at 2448.393 kb on - strand, within PGA1_c23500at 2448.441 kb on - strand, within PGA1_c23500at 2448.508 kb on + strand, within PGA1_c23500at 2448.565 kb on + strand, within PGA1_c23500at 2448.575 kb on + strand, within PGA1_c23500at 2448.616 kb on - strand, within PGA1_c23500at 2448.638 kb on + strand, within PGA1_c23500at 2448.699 kb on + strand, within PGA1_c23500at 2448.743 kb on - strand, within PGA1_c23500at 2448.905 kb on + strand, within PGA1_c23500at 2448.907 kb on + strand, within PGA1_c23500at 2448.907 kb on + strand, within PGA1_c23500at 2448.907 kb on + strand, within PGA1_c23500at 2448.915 kb on - strand, within PGA1_c23500at 2448.925 kb on - strand, within PGA1_c23500at 2449.153 kb on - strandat 2449.153 kb on - strandat 2449.160 kb on - strandat 2449.236 kb on + strandat 2449.244 kb on - strandat 2449.244 kb on - strandat 2449.344 kb on - strandat 2449.344 kb on - strandat 2449.358 kb on + strandat 2449.358 kb on + strandat 2449.365 kb on - strandat 2449.366 kb on - strandat 2450.738 kb on + strandat 2450.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,448,365 - PGA1_c23500 0.57 +4.1
2,448,393 - PGA1_c23500 0.59 +4.2
2,448,441 - PGA1_c23500 0.61 +4.1
2,448,508 + PGA1_c23500 0.64 +4.2
2,448,565 + PGA1_c23500 0.66 +3.8
2,448,575 + PGA1_c23500 0.67 +4.1
2,448,616 - PGA1_c23500 0.69 +4.2
2,448,638 + PGA1_c23500 0.70 +3.8
2,448,699 + PGA1_c23500 0.72 +3.9
2,448,743 - PGA1_c23500 0.74 +4.1
2,448,905 + PGA1_c23500 0.81 +3.3
2,448,907 + PGA1_c23500 0.82 +3.5
2,448,907 + PGA1_c23500 0.82 +4.3
2,448,907 + PGA1_c23500 0.82 +4.1
2,448,915 - PGA1_c23500 0.82 +4.4
2,448,925 - PGA1_c23500 0.82 +3.9
2,449,153 - +4.4
2,449,153 - +4.0
2,449,160 - +4.1
2,449,236 + +4.2
2,449,244 - +4.2
2,449,244 - +4.2
2,449,344 - +2.6
2,449,344 - +2.4
2,449,358 + +4.0
2,449,358 + +4.0
2,449,365 - +2.5
2,449,366 - +4.3
2,450,738 + +0.3
2,450,759 + -0.0

Or see this region's nucleotide sequence