Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0213

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0212 and Psest_0213 overlap by 4 nucleotidesPsest_0213 and Psest_0214 are separated by 70 nucleotides Psest_0212: Psest_0212 - exodeoxyribonuclease V, gamma subunit, at 213,329 to 216,628 _0212 Psest_0213: Psest_0213 - exodeoxyribonuclease V, beta subunit, at 216,625 to 220,173 _0213 Psest_0214: Psest_0214 - exodeoxyribonuclease V, alpha subunit, at 220,244 to 222,091 _0214 Position (kb) 216 217 218 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.241 kb on + strandat 220.241 kb on + strandat 220.241 kb on + strandat 220.241 kb on + strandat 220.242 kb on - strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.243 kb on + strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strandat 220.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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220,241 + -0.3
220,241 + +1.3
220,241 + -0.3
220,241 + -0.7
220,242 - -0.0
220,243 + +0.3
220,243 + +2.3
220,243 + +0.3
220,243 + +2.0
220,243 + +0.3
220,243 + +0.8
220,243 + -0.7
220,243 + -0.9
220,243 + +0.3
220,243 + -0.3
220,243 + +0.9
220,243 + +0.5
220,243 + +0.3
220,243 + +1.3
220,243 + +0.5
220,243 + +1.3
220,243 + +0.8
220,244 - -1.5
220,244 - +1.3
220,244 - +1.3
220,244 - -0.3
220,244 - -0.3
220,244 - +0.3
220,244 - +0.3
220,244 - -0.7
220,244 - -0.7
220,244 - +2.3
220,244 - -3.3
220,244 - -1.0
220,244 - +1.3
220,244 - +0.3
220,244 - +0.3
220,244 - +0.3
220,244 - -0.3

Or see this region's nucleotide sequence