Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0211

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0210 and Psest_0211 are separated by 140 nucleotidesPsest_0211 and Psest_0212 are separated by 226 nucleotides Psest_0210: Psest_0210 - Na/Pi-cotransporter, at 210,380 to 212,065 _0210 Psest_0211: Psest_0211 - hypothetical protein, at 212,206 to 213,102 _0211 Psest_0212: Psest_0212 - exodeoxyribonuclease V, gamma subunit, at 213,329 to 216,628 _0212 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 211.224 kb on + strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.225 kb on - strand, within Psest_0210at 211.332 kb on + strand, within Psest_0210at 211.332 kb on + strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.490 kb on + strand, within Psest_0210at 211.491 kb on - strand, within Psest_0210at 211.509 kb on + strand, within Psest_0210at 211.510 kb on - strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.718 kb on + strand, within Psest_0210at 211.719 kb on - strand, within Psest_0210at 211.980 kb on + strandat 212.008 kb on + strandat 212.008 kb on + strandat 212.184 kb on + strandat 212.185 kb on - strandat 212.185 kb on - strandat 212.185 kb on - strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.239 kb on + strandat 212.239 kb on + strandat 212.240 kb on - strandat 212.240 kb on - strandat 212.240 kb on - strandat 212.240 kb on - strandat 212.309 kb on + strand, within Psest_0211at 212.310 kb on - strand, within Psest_0211at 212.310 kb on - strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.408 kb on - strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.609 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.861 kb on + strand, within Psest_0211at 213.064 kb on + strandat 213.064 kb on + strandat 213.064 kb on + strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.132 kb on + strandat 213.158 kb on + strandat 213.159 kb on - strandat 213.159 kb on - strandat 213.174 kb on - strandat 213.174 kb on - strandat 213.174 kb on - strandat 213.180 kb on + strandat 213.301 kb on + strandat 213.302 kb on - strandat 213.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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211,224 + Psest_0210 0.50 +0.3
211,224 + Psest_0210 0.50 +0.3
211,224 + Psest_0210 0.50 +0.6
211,225 - Psest_0210 0.50 -2.2
211,332 + Psest_0210 0.56 -0.3
211,332 + Psest_0210 0.56 +0.3
211,333 - Psest_0210 0.57 -0.3
211,333 - Psest_0210 0.57 +0.3
211,333 - Psest_0210 0.57 +1.7
211,333 - Psest_0210 0.57 -1.3
211,333 - Psest_0210 0.57 +0.7
211,333 - Psest_0210 0.57 +0.6
211,333 - Psest_0210 0.57 -0.3
211,490 + Psest_0210 0.66 -0.7
211,491 - Psest_0210 0.66 +1.3
211,509 + Psest_0210 0.67 +0.3
211,510 - Psest_0210 0.67 +0.3
211,699 + Psest_0210 0.78 -0.3
211,699 + Psest_0210 0.78 -1.3
211,699 + Psest_0210 0.78 +1.3
211,699 + Psest_0210 0.78 +0.1
211,699 + Psest_0210 0.78 -1.0
211,699 + Psest_0210 0.78 +1.3
211,700 - Psest_0210 0.78 +1.3
211,700 - Psest_0210 0.78 +0.3
211,700 - Psest_0210 0.78 +2.6
211,700 - Psest_0210 0.78 -1.3
211,718 + Psest_0210 0.79 -0.3
211,719 - Psest_0210 0.79 +2.3
211,980 + +0.7
212,008 + +0.3
212,008 + +0.1
212,184 + +0.7
212,185 - +1.6
212,185 - -0.3
212,185 - -0.4
212,219 + -0.7
212,219 + +2.3
212,219 + -0.2
212,219 + +0.4
212,219 + +2.3
212,220 - +0.1
212,220 - +0.6
212,220 - +1.3
212,220 - -0.7
212,220 - +0.5
212,220 - -0.3
212,220 - +0.3
212,220 - +1.1
212,220 - +1.3
212,239 + +2.3
212,239 + +1.3
212,240 - -0.3
212,240 - +1.3
212,240 - +0.3
212,240 - -0.1
212,309 + Psest_0211 0.11 +2.0
212,310 - Psest_0211 0.12 -0.7
212,310 - Psest_0211 0.12 -1.5
212,395 + Psest_0211 0.21 -1.3
212,395 + Psest_0211 0.21 +0.1
212,395 + Psest_0211 0.21 +0.5
212,395 + Psest_0211 0.21 +1.9
212,395 + Psest_0211 0.21 -0.7
212,395 + Psest_0211 0.21 +1.3
212,395 + Psest_0211 0.21 -1.3
212,395 + Psest_0211 0.21 +0.6
212,395 + Psest_0211 0.21 +0.3
212,395 + Psest_0211 0.21 +0.3
212,396 - Psest_0211 0.21 +0.3
212,396 - Psest_0211 0.21 -0.0
212,396 - Psest_0211 0.21 +0.3
212,396 - Psest_0211 0.21 +2.3
212,407 + Psest_0211 0.22 +0.7
212,407 + Psest_0211 0.22 +0.7
212,407 + Psest_0211 0.22 -1.0
212,407 + Psest_0211 0.22 +0.3
212,407 + Psest_0211 0.22 -2.5
212,408 - Psest_0211 0.23 -0.7
212,471 + Psest_0211 0.30 -1.0
212,471 + Psest_0211 0.30 +1.3
212,471 + Psest_0211 0.30 -0.3
212,471 + Psest_0211 0.30 -0.9
212,471 + Psest_0211 0.30 -0.7
212,606 + Psest_0211 0.45 -0.1
212,606 + Psest_0211 0.45 -1.0
212,606 + Psest_0211 0.45 -1.0
212,606 + Psest_0211 0.45 +0.7
212,606 + Psest_0211 0.45 +0.3
212,606 + Psest_0211 0.45 +0.2
212,606 + Psest_0211 0.45 -1.5
212,606 + Psest_0211 0.45 +0.1
212,606 + Psest_0211 0.45 -0.3
212,606 + Psest_0211 0.45 +1.3
212,606 + Psest_0211 0.45 -0.0
212,606 + Psest_0211 0.45 -0.0
212,606 + Psest_0211 0.45 +0.3
212,606 + Psest_0211 0.45 +3.9
212,606 + Psest_0211 0.45 +1.3
212,607 - Psest_0211 0.45 +0.3
212,607 - Psest_0211 0.45 -1.3
212,607 - Psest_0211 0.45 -0.3
212,607 - Psest_0211 0.45 -0.0
212,607 - Psest_0211 0.45 -2.9
212,607 - Psest_0211 0.45 -0.3
212,607 - Psest_0211 0.45 +0.0
212,607 - Psest_0211 0.45 -0.4
212,607 - Psest_0211 0.45 +0.3
212,607 - Psest_0211 0.45 -1.5
212,607 - Psest_0211 0.45 -1.3
212,607 - Psest_0211 0.45 +0.3
212,607 - Psest_0211 0.45 +0.3
212,607 - Psest_0211 0.45 -1.7
212,609 + Psest_0211 0.45 +1.3
212,696 + Psest_0211 0.55 +1.3
212,696 + Psest_0211 0.55 -0.7
212,696 + Psest_0211 0.55 -2.4
212,696 + Psest_0211 0.55 +0.7
212,696 + Psest_0211 0.55 +1.3
212,697 - Psest_0211 0.55 +1.3
212,697 - Psest_0211 0.55 +0.9
212,697 - Psest_0211 0.55 +0.3
212,858 + Psest_0211 0.73 -1.0
212,858 + Psest_0211 0.73 +0.9
212,858 + Psest_0211 0.73 -0.3
212,858 + Psest_0211 0.73 +1.3
212,858 + Psest_0211 0.73 +0.3
212,858 + Psest_0211 0.73 -1.5
212,858 + Psest_0211 0.73 +1.3
212,858 + Psest_0211 0.73 +0.3
212,858 + Psest_0211 0.73 +1.3
212,858 + Psest_0211 0.73 -0.3
212,858 + Psest_0211 0.73 -1.7
212,858 + Psest_0211 0.73 +2.3
212,859 - Psest_0211 0.73 -1.7
212,859 - Psest_0211 0.73 +1.1
212,859 - Psest_0211 0.73 -1.7
212,859 - Psest_0211 0.73 -0.7
212,859 - Psest_0211 0.73 +0.3
212,859 - Psest_0211 0.73 -2.6
212,859 - Psest_0211 0.73 -0.2
212,859 - Psest_0211 0.73 -0.3
212,859 - Psest_0211 0.73 +0.6
212,859 - Psest_0211 0.73 -1.9
212,861 + Psest_0211 0.73 +0.3
213,064 + +1.1
213,064 + +0.3
213,064 + -0.3
213,065 - -0.5
213,065 - +0.3
213,065 - -0.3
213,065 - +1.3
213,132 + -0.3
213,158 + -0.4
213,159 - +2.0
213,159 - -0.3
213,174 - +2.9
213,174 - +0.2
213,174 - +0.4
213,180 + -0.3
213,301 + -0.5
213,302 - -0.7
213,510 + +1.1

Or see this region's nucleotide sequence