Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02110 and PGA1_c02120 are separated by 164 nucleotides PGA1_c02120 and PGA1_c02130 are separated by 5 nucleotides PGA1_c02130 and PGA1_c02140 are separated by 99 nucleotides PGA1_c02140 and PGA1_c02150 are separated by 26 nucleotides
PGA1_c02110: PGA1_c02110 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 194,519 to 195,406
_c02110
PGA1_c02120: PGA1_c02120 - hypothetical protein, at 195,571 to 196,143
_c02120
PGA1_c02130: PGA1_c02130 - conserved hypothetical protein YidD, at 196,149 to 196,421
_c02130
PGA1_c02140: PGA1_c02140 - putative ribonuclease P component, at 196,521 to 196,973
_c02140
PGA1_c02150: PGA1_c02150 - 50S ribosomal protein L34, at 197,000 to 197,134
_c02150
Position (kb) 196
197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.210 kb on + strand, within PGA1_c02110 at 195.210 kb on + strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.218 kb on + strand, within PGA1_c02110 at 195.255 kb on - strand, within PGA1_c02110 at 195.272 kb on + strand, within PGA1_c02110 at 195.415 kb on - strand at 195.475 kb on - strand at 195.486 kb on - strand at 195.530 kb on + strand at 195.556 kb on + strand at 195.556 kb on + strand at 195.562 kb on + strand at 195.562 kb on + strand at 195.564 kb on - strand at 195.570 kb on - strand at 195.617 kb on + strand at 195.672 kb on + strand, within PGA1_c02120 at 195.768 kb on + strand, within PGA1_c02120 at 195.768 kb on + strand, within PGA1_c02120 at 195.776 kb on - strand, within PGA1_c02120 at 195.776 kb on - strand, within PGA1_c02120 at 195.776 kb on - strand, within PGA1_c02120 at 195.778 kb on + strand, within PGA1_c02120 at 195.778 kb on + strand, within PGA1_c02120 at 195.786 kb on - strand, within PGA1_c02120 at 195.786 kb on - strand, within PGA1_c02120 at 195.788 kb on + strand, within PGA1_c02120 at 195.796 kb on - strand, within PGA1_c02120 at 195.821 kb on + strand, within PGA1_c02120 at 195.821 kb on + strand, within PGA1_c02120 at 195.821 kb on + strand, within PGA1_c02120 at 195.829 kb on - strand, within PGA1_c02120 at 195.829 kb on - strand, within PGA1_c02120 at 195.829 kb on - strand, within PGA1_c02120 at 195.857 kb on - strand, within PGA1_c02120 at 195.866 kb on + strand, within PGA1_c02120 at 195.891 kb on + strand, within PGA1_c02120 at 195.942 kb on - strand, within PGA1_c02120 at 195.971 kb on - strand, within PGA1_c02120 at 195.979 kb on - strand, within PGA1_c02120 at 196.060 kb on + strand, within PGA1_c02120 at 196.084 kb on + strand, within PGA1_c02120 at 196.100 kb on + strand at 196.108 kb on - strand at 196.118 kb on - strand at 196.127 kb on + strand at 196.147 kb on + strand at 196.198 kb on - strand, within PGA1_c02130 at 196.211 kb on - strand, within PGA1_c02130 at 196.360 kb on + strand, within PGA1_c02130 at 196.373 kb on + strand, within PGA1_c02130 at 196.417 kb on + strand at 196.423 kb on - strand at 196.448 kb on + strand at 196.466 kb on - strand at 196.495 kb on - strand at 196.504 kb on + strand at 196.504 kb on + strand at 196.504 kb on + strand at 196.512 kb on - strand at 196.977 kb on + strand at 197.335 kb on + strand at 197.368 kb on + strand at 197.370 kb on - strand at 197.376 kb on - strand at 197.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 195,208 + PGA1_c02110 0.78 +0.3 195,208 + PGA1_c02110 0.78 -1.1 195,208 + PGA1_c02110 0.78 -0.8 195,208 + PGA1_c02110 0.78 +0.3 195,208 + PGA1_c02110 0.78 -0.8 195,208 + PGA1_c02110 0.78 +0.9 195,208 + PGA1_c02110 0.78 +0.1 195,208 + PGA1_c02110 0.78 -0.3 195,208 + PGA1_c02110 0.78 -0.2 195,208 + PGA1_c02110 0.78 +0.7 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 +0.1 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 -0.1 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 -0.2 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 +0.3 195,208 + PGA1_c02110 0.78 -0.6 195,208 + PGA1_c02110 0.78 -0.5 195,208 + PGA1_c02110 0.78 -0.4 195,210 + PGA1_c02110 0.78 +1.3 195,210 + PGA1_c02110 0.78 -0.3 195,216 - PGA1_c02110 0.78 -0.5 195,216 - PGA1_c02110 0.78 +0.4 195,216 - PGA1_c02110 0.78 +0.6 195,216 - PGA1_c02110 0.78 -0.5 195,216 - PGA1_c02110 0.78 +0.6 195,216 - PGA1_c02110 0.78 -0.6 195,216 - PGA1_c02110 0.78 +0.2 195,216 - PGA1_c02110 0.78 +0.4 195,216 - PGA1_c02110 0.78 -0.1 195,216 - PGA1_c02110 0.78 +0.3 195,216 - PGA1_c02110 0.78 -0.3 195,216 - PGA1_c02110 0.78 -0.4 195,216 - PGA1_c02110 0.78 +0.7 195,216 - PGA1_c02110 0.78 +0.0 195,216 - PGA1_c02110 0.78 +0.5 195,216 - PGA1_c02110 0.78 -0.0 195,216 - PGA1_c02110 0.78 +0.1 195,216 - PGA1_c02110 0.78 +0.3 195,216 - PGA1_c02110 0.78 +0.7 195,216 - PGA1_c02110 0.78 -1.2 195,216 - PGA1_c02110 0.78 +0.8 195,216 - PGA1_c02110 0.78 +1.4 195,216 - PGA1_c02110 0.78 +0.9 195,216 - PGA1_c02110 0.78 +0.2 195,216 - PGA1_c02110 0.78 +0.7 195,216 - PGA1_c02110 0.78 -0.8 195,216 - PGA1_c02110 0.78 -0.2 195,216 - PGA1_c02110 0.78 +0.2 195,216 - PGA1_c02110 0.78 -0.2 195,216 - PGA1_c02110 0.78 +1.6 195,218 + PGA1_c02110 0.79 -0.1 195,255 - PGA1_c02110 0.83 -0.2 195,272 + PGA1_c02110 0.85 -0.5 195,415 - +0.2 195,475 - +0.7 195,486 - -1.6 195,530 + +0.1 195,556 + +0.8 195,556 + -0.0 195,562 + +0.7 195,562 + +0.6 195,564 - +0.5 195,570 - +0.4 195,617 + +0.3 195,672 + PGA1_c02120 0.18 +0.2 195,768 + PGA1_c02120 0.34 +1.6 195,768 + PGA1_c02120 0.34 +0.5 195,776 - PGA1_c02120 0.36 -0.6 195,776 - PGA1_c02120 0.36 +1.1 195,776 - PGA1_c02120 0.36 -0.1 195,778 + PGA1_c02120 0.36 +0.6 195,778 + PGA1_c02120 0.36 +0.1 195,786 - PGA1_c02120 0.38 -0.0 195,786 - PGA1_c02120 0.38 +0.5 195,788 + PGA1_c02120 0.38 +1.8 195,796 - PGA1_c02120 0.39 +0.2 195,821 + PGA1_c02120 0.44 +0.0 195,821 + PGA1_c02120 0.44 +1.1 195,821 + PGA1_c02120 0.44 +2.2 195,829 - PGA1_c02120 0.45 +0.0 195,829 - PGA1_c02120 0.45 +0.1 195,829 - PGA1_c02120 0.45 -1.1 195,857 - PGA1_c02120 0.50 -0.1 195,866 + PGA1_c02120 0.51 +0.1 195,891 + PGA1_c02120 0.56 +0.3 195,942 - PGA1_c02120 0.65 -0.3 195,971 - PGA1_c02120 0.70 -2.2 195,979 - PGA1_c02120 0.71 +1.0 196,060 + PGA1_c02120 0.85 -1.6 196,084 + PGA1_c02120 0.90 -0.2 196,100 + +0.6 196,108 - +0.1 196,118 - -0.4 196,127 + +0.1 196,147 + -0.9 196,198 - PGA1_c02130 0.18 -0.7 196,211 - PGA1_c02130 0.23 -0.6 196,360 + PGA1_c02130 0.77 -0.2 196,373 + PGA1_c02130 0.82 -0.8 196,417 + +0.6 196,423 - -0.5 196,448 + -0.4 196,466 - +0.6 196,495 - -0.9 196,504 + +0.5 196,504 + -1.3 196,504 + -0.1 196,512 - -0.5 196,977 + +1.1 197,335 + +0.1 197,368 + +1.0 197,370 - -1.3 197,376 - +1.3 197,412 - +0.5
Or see this region's nucleotide sequence