Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1986 and Psest_1987 overlap by 4 nucleotides Psest_1987 and Psest_1988 are separated by 191 nucleotides Psest_1988 and Psest_1989 are separated by 93 nucleotides Psest_1989 and Psest_1990 are separated by 74 nucleotides
Psest_1986: Psest_1986 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,102,568 to 2,104,811
_1986
Psest_1987: Psest_1987 - cytidylate kinase, at 2,104,808 to 2,105,497
_1987
Psest_1988: Psest_1988 - ribosomal protein S1, at 2,105,689 to 2,107,371
_1988
Psest_1989: Psest_1989 - Transcriptional regulators, at 2,107,465 to 2,107,908
_1989
Psest_1990: Psest_1990 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,107,983 to 2,109,155
_1990
Position (kb)
2105
2106
2107
2108 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2107.555 kb on + strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.629 kb on + strand, within Psest_1989 at 2107.630 kb on - strand, within Psest_1989 at 2107.650 kb on + strand, within Psest_1989 at 2107.651 kb on - strand, within Psest_1989 at 2107.724 kb on + strand, within Psest_1989 at 2107.724 kb on + strand, within Psest_1989 at 2107.728 kb on + strand, within Psest_1989 at 2107.728 kb on + strand, within Psest_1989 at 2107.729 kb on - strand, within Psest_1989 at 2107.729 kb on - strand, within Psest_1989 at 2107.871 kb on - strand at 2107.958 kb on + strand at 2108.152 kb on - strand, within Psest_1990 at 2108.331 kb on + strand, within Psest_1990
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 2,107,555 + Psest_1989 0.20 +1.9 2,107,624 - Psest_1989 0.36 +1.3 2,107,624 - Psest_1989 0.36 +1.0 2,107,624 - Psest_1989 0.36 +2.0 2,107,624 - Psest_1989 0.36 +1.3 2,107,629 + Psest_1989 0.37 +1.3 2,107,630 - Psest_1989 0.37 -0.4 2,107,650 + Psest_1989 0.42 +1.4 2,107,651 - Psest_1989 0.42 -1.0 2,107,724 + Psest_1989 0.58 -2.4 2,107,724 + Psest_1989 0.58 -1.9 2,107,728 + Psest_1989 0.59 +1.5 2,107,728 + Psest_1989 0.59 +0.2 2,107,729 - Psest_1989 0.59 -1.7 2,107,729 - Psest_1989 0.59 -0.4 2,107,871 - +1.2 2,107,958 + -1.9 2,108,152 - Psest_1990 0.14 -0.9 2,108,331 + Psest_1990 0.30 +1.9
Or see this region's nucleotide sequence