Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1878

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1877 and Psest_1878 are separated by 81 nucleotidesPsest_1878 and Psest_1879 are separated by 0 nucleotides Psest_1877: Psest_1877 - AraC-type DNA-binding domain-containing proteins, at 1,987,608 to 1,988,657 _1877 Psest_1878: Psest_1878 - Uncharacterized protein conserved in bacteria, at 1,988,739 to 1,989,671 _1878 Psest_1879: Psest_1879 - Trk-type K+ transport systems, membrane components, at 1,989,672 to 1,991,123 _1879 Position (kb) 1988 1989 1990Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1988.217 kb on + strand, within Psest_1877at 1988.310 kb on + strand, within Psest_1877at 1988.310 kb on + strand, within Psest_1877at 1988.311 kb on - strand, within Psest_1877at 1988.553 kb on + strandat 1988.553 kb on + strandat 1988.554 kb on - strandat 1988.655 kb on + strandat 1988.655 kb on + strandat 1988.683 kb on + strandat 1988.684 kb on - strandat 1988.684 kb on - strandat 1988.684 kb on - strandat 1988.687 kb on + strandat 1989.534 kb on + strand, within Psest_1878at 1989.534 kb on + strand, within Psest_1878at 1989.534 kb on + strand, within Psest_1878at 1989.534 kb on + strand, within Psest_1878at 1990.156 kb on + strand, within Psest_1879at 1990.238 kb on + strand, within Psest_1879at 1990.558 kb on + strand, within Psest_1879at 1990.558 kb on + strand, within Psest_1879at 1990.558 kb on + strand, within Psest_1879at 1990.558 kb on + strand, within Psest_1879at 1990.558 kb on - strand, within Psest_1879at 1990.559 kb on - strand, within Psest_1879at 1990.559 kb on - strand, within Psest_1879

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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1,988,217 + Psest_1877 0.58 -1.0
1,988,310 + Psest_1877 0.67 -2.0
1,988,310 + Psest_1877 0.67 -0.8
1,988,311 - Psest_1877 0.67 +1.1
1,988,553 + +1.7
1,988,553 + +0.7
1,988,554 - -0.5
1,988,655 + -1.5
1,988,655 + -0.1
1,988,683 + +1.0
1,988,684 - +0.0
1,988,684 - +0.2
1,988,684 - -1.5
1,988,687 + +0.6
1,989,534 + Psest_1878 0.85 -0.3
1,989,534 + Psest_1878 0.85 -0.5
1,989,534 + Psest_1878 0.85 +1.0
1,989,534 + Psest_1878 0.85 +0.6
1,990,156 + Psest_1879 0.33 +1.3
1,990,238 + Psest_1879 0.39 +0.5
1,990,558 + Psest_1879 0.61 +3.5
1,990,558 + Psest_1879 0.61 +4.0
1,990,558 + Psest_1879 0.61 +2.4
1,990,558 + Psest_1879 0.61 +3.4
1,990,558 - Psest_1879 0.61 +3.6
1,990,559 - Psest_1879 0.61 +1.0
1,990,559 - Psest_1879 0.61 +4.5

Or see this region's nucleotide sequence