Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1878
Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.0016 vol% |
---|---|---|---|---|---|
remove | |||||
1,988,217 | + | Psest_1877 | 0.58 | -1.0 | |
1,988,310 | + | Psest_1877 | 0.67 | -2.0 | |
1,988,310 | + | Psest_1877 | 0.67 | -0.8 | |
1,988,311 | - | Psest_1877 | 0.67 | +1.1 | |
1,988,553 | + | +1.7 | |||
1,988,553 | + | +0.7 | |||
1,988,554 | - | -0.5 | |||
1,988,655 | + | -1.5 | |||
1,988,655 | + | -0.1 | |||
1,988,683 | + | +1.0 | |||
1,988,684 | - | +0.0 | |||
1,988,684 | - | +0.2 | |||
1,988,684 | - | -1.5 | |||
1,988,687 | + | +0.6 | |||
1,989,534 | + | Psest_1878 | 0.85 | -0.3 | |
1,989,534 | + | Psest_1878 | 0.85 | -0.5 | |
1,989,534 | + | Psest_1878 | 0.85 | +1.0 | |
1,989,534 | + | Psest_1878 | 0.85 | +0.6 | |
1,990,156 | + | Psest_1879 | 0.33 | +1.3 | |
1,990,238 | + | Psest_1879 | 0.39 | +0.5 | |
1,990,558 | + | Psest_1879 | 0.61 | +3.5 | |
1,990,558 | + | Psest_1879 | 0.61 | +4.0 | |
1,990,558 | + | Psest_1879 | 0.61 | +2.4 | |
1,990,558 | + | Psest_1879 | 0.61 | +3.4 | |
1,990,558 | - | Psest_1879 | 0.61 | +3.6 | |
1,990,559 | - | Psest_1879 | 0.61 | +1.0 | |
1,990,559 | - | Psest_1879 | 0.61 | +4.5 |
Or see this region's nucleotide sequence