Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1692 and Psest_1693 overlap by 4 nucleotides Psest_1693 and Psest_1694 overlap by 8 nucleotides Psest_1694 and Psest_1695 are separated by 31 nucleotides Psest_1695 and Psest_1696 are separated by 103 nucleotides
Psest_1692: Psest_1692 - conserved hypothetical protein, YceG family, at 1,799,741 to 1,800,811
_1692
Psest_1693: Psest_1693 - thymidylate kinase, at 1,800,808 to 1,801,440
_1693
Psest_1694: Psest_1694 - DNA polymerase III, delta' subunit, at 1,801,433 to 1,802,419
_1694
Psest_1695: Psest_1695 - Tfp pilus assembly protein PilZ, at 1,802,451 to 1,802,807
_1695
Psest_1696: Psest_1696 - hydrolase, TatD family, at 1,802,911 to 1,803,696
_1696
Position (kb)
1801
1802
1803 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.656 kb on + strand, within Psest_1692 at 1800.656 kb on + strand, within Psest_1692 at 1800.731 kb on + strand at 1802.523 kb on + strand, within Psest_1695 at 1802.583 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.761 kb on - strand, within Psest_1695 at 1802.806 kb on - strand at 1802.900 kb on + strand at 1802.901 kb on - strand at 1802.901 kb on - strand at 1802.918 kb on + strand at 1802.918 kb on + strand at 1802.918 kb on + strand at 1802.919 kb on - strand at 1802.919 kb on - strand at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.208 kb on + strand, within Psest_1696 at 1803.208 kb on + strand, within Psest_1696 at 1803.214 kb on + strand, within Psest_1696 at 1803.286 kb on - strand, within Psest_1696 at 1803.286 kb on - strand, within Psest_1696 at 1803.338 kb on + strand, within Psest_1696 at 1803.338 kb on + strand, within Psest_1696 at 1803.338 kb on + strand, within Psest_1696
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 1,800,491 + Psest_1692 0.70 -2.0 1,800,491 + Psest_1692 0.70 -0.4 1,800,491 + Psest_1692 0.70 +1.0 1,800,491 + Psest_1692 0.70 +0.7 1,800,491 + Psest_1692 0.70 +0.4 1,800,491 + Psest_1692 0.70 -0.1 1,800,491 + Psest_1692 0.70 +0.2 1,800,491 + Psest_1692 0.70 +0.3 1,800,491 + Psest_1692 0.70 +1.2 1,800,491 + Psest_1692 0.70 -3.4 1,800,491 + Psest_1692 0.70 +0.3 1,800,491 + Psest_1692 0.70 -0.1 1,800,491 + Psest_1692 0.70 +0.2 1,800,491 + Psest_1692 0.70 -2.8 1,800,491 + Psest_1692 0.70 -1.1 1,800,491 + Psest_1692 0.70 -0.8 1,800,559 + Psest_1692 0.76 -0.2 1,800,559 + Psest_1692 0.76 -1.1 1,800,559 + Psest_1692 0.76 +0.6 1,800,563 + Psest_1692 0.77 -0.4 1,800,563 + Psest_1692 0.77 -3.8 1,800,563 + Psest_1692 0.77 +0.0 1,800,563 + Psest_1692 0.77 -0.8 1,800,563 + Psest_1692 0.77 -2.1 1,800,563 + Psest_1692 0.77 +1.4 1,800,563 + Psest_1692 0.77 +0.5 1,800,656 + Psest_1692 0.85 +0.0 1,800,656 + Psest_1692 0.85 +0.9 1,800,731 + +0.7 1,802,523 + Psest_1695 0.20 +0.2 1,802,583 + Psest_1695 0.37 +0.8 1,802,760 + Psest_1695 0.87 -3.1 1,802,760 + Psest_1695 0.87 +1.5 1,802,760 + Psest_1695 0.87 +2.3 1,802,760 + Psest_1695 0.87 +1.7 1,802,760 + Psest_1695 0.87 -1.9 1,802,761 - Psest_1695 0.87 -0.9 1,802,806 - +0.8 1,802,900 + +2.6 1,802,901 - -2.8 1,802,901 - +0.5 1,802,918 + -0.3 1,802,918 + -0.6 1,802,918 + -3.9 1,802,919 - -2.6 1,802,919 - -0.8 1,803,026 + Psest_1696 0.15 -0.1 1,803,026 + Psest_1696 0.15 +1.3 1,803,026 + Psest_1696 0.15 -1.4 1,803,026 + Psest_1696 0.15 -2.0 1,803,026 + Psest_1696 0.15 -2.5 1,803,026 + Psest_1696 0.15 -3.6 1,803,026 + Psest_1696 0.15 -2.0 1,803,026 + Psest_1696 0.15 +0.5 1,803,026 + Psest_1696 0.15 +0.5 1,803,027 - Psest_1696 0.15 -1.0 1,803,027 - Psest_1696 0.15 -2.5 1,803,027 - Psest_1696 0.15 +0.4 1,803,027 - Psest_1696 0.15 -0.9 1,803,208 + Psest_1696 0.38 +1.3 1,803,208 + Psest_1696 0.38 -2.3 1,803,214 + Psest_1696 0.39 -1.1 1,803,286 - Psest_1696 0.48 -1.1 1,803,286 - Psest_1696 0.48 +0.5 1,803,338 + Psest_1696 0.54 -1.4 1,803,338 + Psest_1696 0.54 -1.5 1,803,338 + Psest_1696 0.54 +0.2
Or see this region's nucleotide sequence