Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1629 and Psest_1630 are separated by 6 nucleotides Psest_1630 and Psest_1631 are separated by 96 nucleotides Psest_1631 and Psest_1632 are separated by 0 nucleotides Psest_1632 and Psest_1633 are separated by 179 nucleotides
Psest_1629: Psest_1629 - hypothetical protein, at 1,731,030 to 1,731,410
_1629
Psest_1630: Psest_1630 - Transcriptional regulator, at 1,731,417 to 1,732,271
_1630
Psest_1631: Psest_1631 - Uncharacterized conserved small protein, at 1,732,368 to 1,732,604
_1631
Psest_1632: Psest_1632 - Predicted permeases, at 1,732,605 to 1,733,360
_1632
Psest_1633: Psest_1633 - Protein of unknown function (DUF3365)., at 1,733,540 to 1,734,097
_1633
Position (kb)
1732
1733 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1731.419 kb on - strand at 1731.440 kb on + strand at 1731.442 kb on + strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.544 kb on - strand, within Psest_1630 at 1731.639 kb on - strand, within Psest_1630 at 1731.640 kb on + strand, within Psest_1630 at 1731.641 kb on - strand, within Psest_1630 at 1731.796 kb on - strand, within Psest_1630 at 1731.796 kb on - strand, within Psest_1630 at 1731.796 kb on - strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.862 kb on - strand, within Psest_1630 at 1731.862 kb on - strand, within Psest_1630 at 1731.862 kb on - strand, within Psest_1630 at 1731.955 kb on + strand, within Psest_1630 at 1731.955 kb on + strand, within Psest_1630 at 1732.063 kb on - strand, within Psest_1630 at 1732.063 kb on - strand, within Psest_1630 at 1732.262 kb on - strand at 1732.322 kb on + strand at 1732.373 kb on + strand at 1732.374 kb on - strand at 1732.394 kb on + strand, within Psest_1631 at 1732.394 kb on + strand, within Psest_1631 at 1732.395 kb on - strand, within Psest_1631 at 1732.699 kb on + strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.792 kb on + strand, within Psest_1632 at 1732.793 kb on - strand, within Psest_1632 at 1732.793 kb on - strand, within Psest_1632 at 1733.352 kb on + strand at 1733.352 kb on + strand at 1733.352 kb on + strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.461 kb on + strand at 1733.461 kb on + strand at 1733.461 kb on + strand at 1733.462 kb on - strand at 1733.462 kb on - strand at 1733.462 kb on - strand at 1733.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 1,731,419 - +0.1 1,731,440 + +0.5 1,731,442 + -0.9 1,731,443 - +0.1 1,731,443 - -0.9 1,731,443 - +0.6 1,731,543 + Psest_1630 0.15 +0.1 1,731,543 + Psest_1630 0.15 +0.8 1,731,543 + Psest_1630 0.15 -0.1 1,731,543 + Psest_1630 0.15 +0.8 1,731,544 - Psest_1630 0.15 -2.1 1,731,639 - Psest_1630 0.26 +0.6 1,731,640 + Psest_1630 0.26 +0.3 1,731,641 - Psest_1630 0.26 -0.6 1,731,796 - Psest_1630 0.44 +0.7 1,731,796 - Psest_1630 0.44 +1.7 1,731,796 - Psest_1630 0.44 +0.1 1,731,861 + Psest_1630 0.52 +1.1 1,731,861 + Psest_1630 0.52 -1.7 1,731,861 + Psest_1630 0.52 +1.3 1,731,861 + Psest_1630 0.52 -1.7 1,731,862 - Psest_1630 0.52 -2.1 1,731,862 - Psest_1630 0.52 -1.5 1,731,862 - Psest_1630 0.52 +0.3 1,731,955 + Psest_1630 0.63 -2.1 1,731,955 + Psest_1630 0.63 -0.9 1,732,063 - Psest_1630 0.76 -0.2 1,732,063 - Psest_1630 0.76 +0.8 1,732,262 - +0.2 1,732,322 + +0.6 1,732,373 + +0.1 1,732,374 - +0.2 1,732,394 + Psest_1631 0.11 +0.5 1,732,394 + Psest_1631 0.11 -1.7 1,732,395 - Psest_1631 0.11 -2.8 1,732,699 + Psest_1632 0.12 -1.2 1,732,700 - Psest_1632 0.13 +2.4 1,732,700 - Psest_1632 0.13 +0.5 1,732,700 - Psest_1632 0.13 -1.7 1,732,792 + Psest_1632 0.25 +0.9 1,732,793 - Psest_1632 0.25 +0.0 1,732,793 - Psest_1632 0.25 +0.7 1,733,352 + -1.2 1,733,352 + -0.5 1,733,352 + +1.1 1,733,353 - +0.9 1,733,353 - +1.1 1,733,353 - +1.1 1,733,353 - -1.0 1,733,353 - +0.8 1,733,353 - +1.1 1,733,353 - +0.1 1,733,353 - +0.1 1,733,461 + +2.7 1,733,461 + +2.5 1,733,461 + +0.1 1,733,462 - -0.5 1,733,462 - +1.1 1,733,462 - +1.1 1,733,511 + +0.4
Or see this region's nucleotide sequence