Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1497 and Psest_1498 are separated by 51 nucleotides Psest_1498 and Psest_1499 are separated by 2 nucleotides Psest_1499 and Psest_1500 are separated by 11 nucleotides Psest_1500 and Psest_1501 overlap by 1 nucleotides
Psest_1497: Psest_1497 - Holliday junction DNA helicase, RuvB subunit, at 1,598,766 to 1,599,818
_1497
Psest_1498: Psest_1498 - tol-pal system-associated acyl-CoA thioesterase, at 1,599,870 to 1,600,313
_1498
Psest_1499: Psest_1499 - TolQ protein, at 1,600,316 to 1,601,008
_1499
Psest_1500: Psest_1500 - TolR protein, at 1,601,020 to 1,601,460
_1500
Psest_1501: Psest_1501 - TolA protein, at 1,601,460 to 1,602,461
_1501
Position (kb) 1600
1601
1602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1599.446 kb on - strand, within Psest_1497 at 1599.811 kb on + strand at 1599.866 kb on + strand at 1599.869 kb on + strand at 1599.869 kb on + strand at 1599.869 kb on + strand at 1599.921 kb on + strand, within Psest_1498 at 1599.951 kb on + strand, within Psest_1498 at 1599.954 kb on + strand, within Psest_1498 at 1599.963 kb on + strand, within Psest_1498 at 1600.180 kb on + strand, within Psest_1498
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 1,599,446 - Psest_1497 0.65 -2.1 1,599,811 + -0.7 1,599,866 + -1.0 1,599,869 + -3.2 1,599,869 + -2.2 1,599,869 + -2.8 1,599,921 + Psest_1498 0.11 -2.0 1,599,951 + Psest_1498 0.18 -3.1 1,599,954 + Psest_1498 0.19 -2.9 1,599,963 + Psest_1498 0.21 -0.7 1,600,180 + Psest_1498 0.70 -1.9
Or see this region's nucleotide sequence