Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1498

Experiment: methylglyoxal 0.0016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1497 and Psest_1498 are separated by 51 nucleotidesPsest_1498 and Psest_1499 are separated by 2 nucleotidesPsest_1499 and Psest_1500 are separated by 11 nucleotides Psest_1497: Psest_1497 - Holliday junction DNA helicase, RuvB subunit, at 1,598,766 to 1,599,818 _1497 Psest_1498: Psest_1498 - tol-pal system-associated acyl-CoA thioesterase, at 1,599,870 to 1,600,313 _1498 Psest_1499: Psest_1499 - TolQ protein, at 1,600,316 to 1,601,008 _1499 Psest_1500: Psest_1500 - TolR protein, at 1,601,020 to 1,601,460 _1500 Position (kb) 1599 1600 1601Strain fitness (log2 ratio) -3 -2 -1 0 1at 1599.446 kb on - strand, within Psest_1497at 1599.811 kb on + strandat 1599.866 kb on + strandat 1599.869 kb on + strandat 1599.869 kb on + strandat 1599.869 kb on + strandat 1599.921 kb on + strand, within Psest_1498at 1599.951 kb on + strand, within Psest_1498at 1599.954 kb on + strand, within Psest_1498at 1599.963 kb on + strand, within Psest_1498at 1600.180 kb on + strand, within Psest_1498

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
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1,599,446 - Psest_1497 0.65 -2.1
1,599,811 + -0.7
1,599,866 + -1.0
1,599,869 + -3.2
1,599,869 + -2.2
1,599,869 + -2.8
1,599,921 + Psest_1498 0.11 -2.0
1,599,951 + Psest_1498 0.18 -3.1
1,599,954 + Psest_1498 0.19 -2.9
1,599,963 + Psest_1498 0.21 -0.7
1,600,180 + Psest_1498 0.70 -1.9

Or see this region's nucleotide sequence