Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1497

Experiment: methylglyoxal 0.0016 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1495 and Psest_1496 are separated by 73 nucleotidesPsest_1496 and Psest_1497 are separated by 3 nucleotidesPsest_1497 and Psest_1498 are separated by 51 nucleotidesPsest_1498 and Psest_1499 are separated by 2 nucleotides Psest_1495: Psest_1495 - crossover junction endodeoxyribonuclease RuvC, at 1,597,559 to 1,598,083 _1495 Psest_1496: Psest_1496 - Holliday junction DNA helicase, RuvA subunit, at 1,598,157 to 1,598,762 _1496 Psest_1497: Psest_1497 - Holliday junction DNA helicase, RuvB subunit, at 1,598,766 to 1,599,818 _1497 Psest_1498: Psest_1498 - tol-pal system-associated acyl-CoA thioesterase, at 1,599,870 to 1,600,313 _1498 Psest_1499: Psest_1499 - TolQ protein, at 1,600,316 to 1,601,008 _1499 Position (kb) 1598 1599 1600Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1598.113 kb on - strandat 1598.332 kb on + strand, within Psest_1496at 1598.333 kb on - strand, within Psest_1496at 1598.333 kb on - strand, within Psest_1496at 1598.760 kb on + strandat 1598.760 kb on + strandat 1598.760 kb on + strandat 1598.760 kb on + strandat 1598.761 kb on - strandat 1599.446 kb on - strand, within Psest_1497at 1599.811 kb on + strandat 1599.866 kb on + strandat 1599.869 kb on + strandat 1599.869 kb on + strandat 1599.869 kb on + strandat 1599.921 kb on + strand, within Psest_1498at 1599.951 kb on + strand, within Psest_1498at 1599.954 kb on + strand, within Psest_1498at 1599.963 kb on + strand, within Psest_1498at 1600.180 kb on + strand, within Psest_1498

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol%
remove
1,598,113 - -3.1
1,598,332 + Psest_1496 0.29 -1.9
1,598,333 - Psest_1496 0.29 -3.3
1,598,333 - Psest_1496 0.29 -2.7
1,598,760 + -0.6
1,598,760 + +0.2
1,598,760 + -4.3
1,598,760 + -1.7
1,598,761 - -1.2
1,599,446 - Psest_1497 0.65 -2.1
1,599,811 + -0.7
1,599,866 + -1.0
1,599,869 + -3.2
1,599,869 + -2.2
1,599,869 + -2.8
1,599,921 + Psest_1498 0.11 -2.0
1,599,951 + Psest_1498 0.18 -3.1
1,599,954 + Psest_1498 0.19 -2.9
1,599,963 + Psest_1498 0.21 -0.7
1,600,180 + Psest_1498 0.70 -1.9

Or see this region's nucleotide sequence