Experiment: methylglyoxal 0.0016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1495 and Psest_1496 are separated by 73 nucleotides Psest_1496 and Psest_1497 are separated by 3 nucleotides Psest_1497 and Psest_1498 are separated by 51 nucleotides Psest_1498 and Psest_1499 are separated by 2 nucleotides
Psest_1495: Psest_1495 - crossover junction endodeoxyribonuclease RuvC, at 1,597,559 to 1,598,083
_1495
Psest_1496: Psest_1496 - Holliday junction DNA helicase, RuvA subunit, at 1,598,157 to 1,598,762
_1496
Psest_1497: Psest_1497 - Holliday junction DNA helicase, RuvB subunit, at 1,598,766 to 1,599,818
_1497
Psest_1498: Psest_1498 - tol-pal system-associated acyl-CoA thioesterase, at 1,599,870 to 1,600,313
_1498
Psest_1499: Psest_1499 - TolQ protein, at 1,600,316 to 1,601,008
_1499
Position (kb)
1598
1599
1600 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1598.113 kb on - strand at 1598.332 kb on + strand, within Psest_1496 at 1598.333 kb on - strand, within Psest_1496 at 1598.333 kb on - strand, within Psest_1496 at 1598.760 kb on + strand at 1598.760 kb on + strand at 1598.760 kb on + strand at 1598.760 kb on + strand at 1598.761 kb on - strand at 1599.446 kb on - strand, within Psest_1497 at 1599.811 kb on + strand at 1599.866 kb on + strand at 1599.869 kb on + strand at 1599.869 kb on + strand at 1599.869 kb on + strand at 1599.921 kb on + strand, within Psest_1498 at 1599.951 kb on + strand, within Psest_1498 at 1599.954 kb on + strand, within Psest_1498 at 1599.963 kb on + strand, within Psest_1498 at 1600.180 kb on + strand, within Psest_1498
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.0016 vol% remove 1,598,113 - -3.1 1,598,332 + Psest_1496 0.29 -1.9 1,598,333 - Psest_1496 0.29 -3.3 1,598,333 - Psest_1496 0.29 -2.7 1,598,760 + -0.6 1,598,760 + +0.2 1,598,760 + -4.3 1,598,760 + -1.7 1,598,761 - -1.2 1,599,446 - Psest_1497 0.65 -2.1 1,599,811 + -0.7 1,599,866 + -1.0 1,599,869 + -3.2 1,599,869 + -2.2 1,599,869 + -2.8 1,599,921 + Psest_1498 0.11 -2.0 1,599,951 + Psest_1498 0.18 -3.1 1,599,954 + Psest_1498 0.19 -2.9 1,599,963 + Psest_1498 0.21 -0.7 1,600,180 + Psest_1498 0.70 -1.9
Or see this region's nucleotide sequence