Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13130 and PGA1_c13140 are separated by 45 nucleotides PGA1_c13140 and PGA1_c13150 are separated by 103 nucleotides
PGA1_c13130: PGA1_c13130 - TRAP transporter, subunit DctM, at 1,357,033 to 1,358,508
_c13130
PGA1_c13140: PGA1_c13140 - putative TRAP transporter extracellular solute binding protein, family 7, at 1,358,554 to 1,359,612
_c13140
PGA1_c13150: PGA1_c13150 - di-haem cytochrome c peroxidase-like protein, at 1,359,716 to 1,361,515
_c13150
Position (kb)
1358
1359
1360 Strain fitness (log2 ratio)
-2
-1
0
1 at 1357.565 kb on + strand, within PGA1_c13130 at 1357.577 kb on + strand, within PGA1_c13130 at 1357.585 kb on - strand, within PGA1_c13130 at 1357.655 kb on + strand, within PGA1_c13130 at 1357.714 kb on + strand, within PGA1_c13130 at 1357.886 kb on + strand, within PGA1_c13130 at 1357.894 kb on - strand, within PGA1_c13130 at 1358.107 kb on - strand, within PGA1_c13130 at 1358.313 kb on + strand, within PGA1_c13130 at 1358.313 kb on + strand, within PGA1_c13130 at 1358.332 kb on + strand, within PGA1_c13130 at 1358.361 kb on + strand at 1358.372 kb on + strand at 1358.397 kb on + strand at 1358.453 kb on + strand at 1358.590 kb on + strand at 1358.590 kb on + strand at 1358.590 kb on + strand at 1358.590 kb on + strand at 1358.598 kb on - strand at 1358.611 kb on - strand at 1358.629 kb on + strand at 1358.674 kb on + strand, within PGA1_c13140 at 1358.682 kb on - strand, within PGA1_c13140 at 1358.682 kb on - strand, within PGA1_c13140 at 1358.684 kb on + strand, within PGA1_c13140 at 1358.684 kb on + strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.735 kb on + strand, within PGA1_c13140 at 1358.768 kb on - strand, within PGA1_c13140 at 1358.840 kb on + strand, within PGA1_c13140 at 1358.840 kb on + strand, within PGA1_c13140 at 1358.850 kb on + strand, within PGA1_c13140 at 1358.853 kb on - strand, within PGA1_c13140 at 1358.858 kb on - strand, within PGA1_c13140 at 1358.858 kb on - strand, within PGA1_c13140 at 1358.863 kb on - strand, within PGA1_c13140 at 1358.866 kb on + strand, within PGA1_c13140 at 1358.872 kb on + strand, within PGA1_c13140 at 1359.065 kb on - strand, within PGA1_c13140 at 1359.072 kb on - strand, within PGA1_c13140 at 1359.108 kb on + strand, within PGA1_c13140 at 1359.128 kb on + strand, within PGA1_c13140 at 1359.136 kb on - strand, within PGA1_c13140 at 1359.146 kb on + strand, within PGA1_c13140 at 1359.146 kb on + strand, within PGA1_c13140 at 1359.146 kb on + strand, within PGA1_c13140 at 1359.149 kb on - strand, within PGA1_c13140 at 1359.154 kb on - strand, within PGA1_c13140 at 1359.164 kb on - strand, within PGA1_c13140 at 1359.180 kb on + strand, within PGA1_c13140 at 1359.181 kb on + strand, within PGA1_c13140 at 1359.198 kb on - strand, within PGA1_c13140 at 1359.217 kb on + strand, within PGA1_c13140 at 1359.248 kb on + strand, within PGA1_c13140 at 1359.275 kb on - strand, within PGA1_c13140 at 1359.293 kb on - strand, within PGA1_c13140 at 1359.305 kb on - strand, within PGA1_c13140 at 1359.344 kb on - strand, within PGA1_c13140 at 1359.359 kb on - strand, within PGA1_c13140 at 1359.400 kb on + strand, within PGA1_c13140 at 1359.400 kb on + strand, within PGA1_c13140 at 1359.545 kb on + strand at 1359.549 kb on + strand at 1359.614 kb on - strand at 1359.651 kb on - strand at 1359.656 kb on - strand at 1359.656 kb on - strand at 1359.686 kb on + strand at 1359.686 kb on + strand at 1359.687 kb on + strand at 1359.715 kb on - strand at 1359.822 kb on - strand at 1359.843 kb on + strand at 1359.957 kb on - strand, within PGA1_c13150 at 1359.969 kb on - strand, within PGA1_c13150 at 1360.059 kb on + strand, within PGA1_c13150 at 1360.059 kb on + strand, within PGA1_c13150 at 1360.128 kb on + strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.183 kb on + strand, within PGA1_c13150 at 1360.185 kb on + strand, within PGA1_c13150 at 1360.185 kb on + strand, within PGA1_c13150 at 1360.191 kb on - strand, within PGA1_c13150 at 1360.196 kb on - strand, within PGA1_c13150 at 1360.286 kb on - strand, within PGA1_c13150 at 1360.286 kb on - strand, within PGA1_c13150 at 1360.364 kb on - strand, within PGA1_c13150 at 1360.412 kb on + strand, within PGA1_c13150 at 1360.510 kb on + strand, within PGA1_c13150 at 1360.510 kb on + strand, within PGA1_c13150 at 1360.547 kb on + strand, within PGA1_c13150 at 1360.552 kb on + strand, within PGA1_c13150 at 1360.560 kb on - strand, within PGA1_c13150 at 1360.560 kb on - strand, within PGA1_c13150
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,357,565 + PGA1_c13130 0.36 +0.9 1,357,577 + PGA1_c13130 0.37 +1.2 1,357,585 - PGA1_c13130 0.37 +0.1 1,357,655 + PGA1_c13130 0.42 +0.1 1,357,714 + PGA1_c13130 0.46 -1.7 1,357,886 + PGA1_c13130 0.58 +0.6 1,357,894 - PGA1_c13130 0.58 -0.6 1,358,107 - PGA1_c13130 0.73 -0.5 1,358,313 + PGA1_c13130 0.87 +0.1 1,358,313 + PGA1_c13130 0.87 +0.4 1,358,332 + PGA1_c13130 0.88 -0.2 1,358,361 + -0.6 1,358,372 + +0.0 1,358,397 + -1.1 1,358,453 + -0.3 1,358,590 + -0.3 1,358,590 + +0.3 1,358,590 + +0.5 1,358,590 + +0.2 1,358,598 - -1.6 1,358,611 - +0.3 1,358,629 + -0.1 1,358,674 + PGA1_c13140 0.11 -0.7 1,358,682 - PGA1_c13140 0.12 -0.7 1,358,682 - PGA1_c13140 0.12 +0.2 1,358,684 + PGA1_c13140 0.12 -0.4 1,358,684 + PGA1_c13140 0.12 +0.3 1,358,692 - PGA1_c13140 0.13 +1.2 1,358,692 - PGA1_c13140 0.13 -0.8 1,358,692 - PGA1_c13140 0.13 -0.6 1,358,692 - PGA1_c13140 0.13 +0.1 1,358,692 - PGA1_c13140 0.13 +0.1 1,358,735 + PGA1_c13140 0.17 +0.1 1,358,768 - PGA1_c13140 0.20 +0.3 1,358,840 + PGA1_c13140 0.27 +0.5 1,358,840 + PGA1_c13140 0.27 -1.1 1,358,850 + PGA1_c13140 0.28 -0.6 1,358,853 - PGA1_c13140 0.28 -0.4 1,358,858 - PGA1_c13140 0.29 +0.9 1,358,858 - PGA1_c13140 0.29 -0.4 1,358,863 - PGA1_c13140 0.29 +0.0 1,358,866 + PGA1_c13140 0.29 +0.3 1,358,872 + PGA1_c13140 0.30 +0.3 1,359,065 - PGA1_c13140 0.48 +0.3 1,359,072 - PGA1_c13140 0.49 +0.5 1,359,108 + PGA1_c13140 0.52 -0.9 1,359,128 + PGA1_c13140 0.54 -0.1 1,359,136 - PGA1_c13140 0.55 -0.1 1,359,146 + PGA1_c13140 0.56 -0.4 1,359,146 + PGA1_c13140 0.56 +0.4 1,359,146 + PGA1_c13140 0.56 +0.2 1,359,149 - PGA1_c13140 0.56 +0.3 1,359,154 - PGA1_c13140 0.57 -0.5 1,359,164 - PGA1_c13140 0.58 +1.1 1,359,180 + PGA1_c13140 0.59 +0.3 1,359,181 + PGA1_c13140 0.59 +0.6 1,359,198 - PGA1_c13140 0.61 +0.1 1,359,217 + PGA1_c13140 0.63 -1.6 1,359,248 + PGA1_c13140 0.66 -0.7 1,359,275 - PGA1_c13140 0.68 +0.1 1,359,293 - PGA1_c13140 0.70 -0.0 1,359,305 - PGA1_c13140 0.71 +0.5 1,359,344 - PGA1_c13140 0.75 -0.7 1,359,359 - PGA1_c13140 0.76 +0.4 1,359,400 + PGA1_c13140 0.80 +0.4 1,359,400 + PGA1_c13140 0.80 +0.0 1,359,545 + +0.7 1,359,549 + +0.4 1,359,614 - -0.6 1,359,651 - -2.4 1,359,656 - +0.2 1,359,656 - -0.0 1,359,686 + -0.4 1,359,686 + +0.9 1,359,687 + +0.1 1,359,715 - -0.2 1,359,822 - +0.2 1,359,843 + +0.0 1,359,957 - PGA1_c13150 0.13 +0.4 1,359,969 - PGA1_c13150 0.14 -1.2 1,360,059 + PGA1_c13150 0.19 -0.7 1,360,059 + PGA1_c13150 0.19 +0.2 1,360,128 + PGA1_c13150 0.23 +0.4 1,360,136 - PGA1_c13150 0.23 -0.4 1,360,136 - PGA1_c13150 0.23 +0.0 1,360,136 - PGA1_c13150 0.23 +0.1 1,360,136 - PGA1_c13150 0.23 -0.7 1,360,183 + PGA1_c13150 0.26 +0.2 1,360,185 + PGA1_c13150 0.26 -0.3 1,360,185 + PGA1_c13150 0.26 +0.0 1,360,191 - PGA1_c13150 0.26 +0.5 1,360,196 - PGA1_c13150 0.27 +0.3 1,360,286 - PGA1_c13150 0.32 -0.2 1,360,286 - PGA1_c13150 0.32 -0.6 1,360,364 - PGA1_c13150 0.36 -0.3 1,360,412 + PGA1_c13150 0.39 +0.1 1,360,510 + PGA1_c13150 0.44 -0.2 1,360,510 + PGA1_c13150 0.44 +0.3 1,360,547 + PGA1_c13150 0.46 -0.1 1,360,552 + PGA1_c13150 0.46 -0.5 1,360,560 - PGA1_c13150 0.47 -1.0 1,360,560 - PGA1_c13150 0.47 +1.2
Or see this region's nucleotide sequence