Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1180 and HP15_tRNA18 are separated by 69 nucleotides HP15_tRNA18 and HP15_1181 are separated by 440 nucleotides HP15_1181 and HP15_1182 are separated by 44 nucleotides HP15_1182 and HP15_1183 are separated by 31 nucleotides HP15_1183 and HP15_1184 are separated by 33 nucleotides
HP15_1180: HP15_1180 - ribonuclease HII, at 1,212,915 to 1,213,601
_1180
HP15_tRNA18: HP15_tRNA18 - tRNA-Met, at 1,213,671 to 1,213,747
_tRNA18
HP15_1181: HP15_1181 - hypothetical protein, at 1,214,188 to 1,214,301
_1181
HP15_1182: HP15_1182 - ribonuclease HII-like protein, at 1,214,346 to 1,214,561
_1182
HP15_1183: HP15_1183 - signal transduction histidine kinase with CHASE2 and PAS sensor domains, at 1,214,593 to 1,217,160
_1183
HP15_1184: HP15_1184 - peptidoglycan-binding LysM, at 1,217,194 to 1,218,831
_1184
Position (kb) 1214
1215
1216
1217
1218 Strain fitness (log2 ratio) -1
0
1 at 1213.777 kb on + strand at 1213.886 kb on - strand at 1214.026 kb on + strand at 1214.229 kb on + strand, within HP15_1181 at 1214.570 kb on - strand at 1214.646 kb on - strand at 1214.646 kb on - strand at 1214.865 kb on + strand, within HP15_1183 at 1214.873 kb on - strand, within HP15_1183 at 1214.892 kb on - strand, within HP15_1183 at 1214.892 kb on - strand, within HP15_1183 at 1215.078 kb on + strand, within HP15_1183 at 1215.271 kb on - strand, within HP15_1183 at 1215.387 kb on + strand, within HP15_1183 at 1215.388 kb on - strand, within HP15_1183 at 1215.494 kb on - strand, within HP15_1183 at 1215.566 kb on - strand, within HP15_1183 at 1215.869 kb on - strand, within HP15_1183 at 1215.964 kb on - strand, within HP15_1183 at 1216.030 kb on - strand, within HP15_1183 at 1216.072 kb on - strand, within HP15_1183 at 1216.082 kb on - strand, within HP15_1183 at 1216.107 kb on - strand, within HP15_1183 at 1216.172 kb on + strand, within HP15_1183 at 1216.212 kb on + strand, within HP15_1183 at 1216.255 kb on + strand, within HP15_1183 at 1216.372 kb on + strand, within HP15_1183 at 1216.372 kb on + strand, within HP15_1183 at 1216.385 kb on - strand, within HP15_1183 at 1216.388 kb on + strand, within HP15_1183 at 1216.548 kb on - strand, within HP15_1183 at 1216.617 kb on + strand, within HP15_1183 at 1216.617 kb on + strand, within HP15_1183 at 1216.617 kb on + strand, within HP15_1183 at 1216.625 kb on - strand, within HP15_1183 at 1216.633 kb on + strand, within HP15_1183 at 1216.667 kb on - strand, within HP15_1183 at 1216.667 kb on - strand, within HP15_1183 at 1216.716 kb on - strand, within HP15_1183 at 1216.724 kb on + strand, within HP15_1183 at 1216.767 kb on + strand, within HP15_1183 at 1216.774 kb on + strand, within HP15_1183 at 1216.775 kb on - strand, within HP15_1183 at 1216.932 kb on + strand at 1216.949 kb on - strand at 1217.095 kb on - strand at 1217.116 kb on - strand at 1217.120 kb on + strand at 1217.828 kb on - strand, within HP15_1184 at 1218.008 kb on + strand, within HP15_1184
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,213,777 + -0.7 1,213,886 - -1.5 1,214,026 + +0.9 1,214,229 + HP15_1181 0.36 +1.1 1,214,570 - +1.3 1,214,646 - -0.3 1,214,646 - -0.2 1,214,865 + HP15_1183 0.11 +0.4 1,214,873 - HP15_1183 0.11 +0.2 1,214,892 - HP15_1183 0.12 +0.0 1,214,892 - HP15_1183 0.12 -0.2 1,215,078 + HP15_1183 0.19 +0.0 1,215,271 - HP15_1183 0.26 -0.5 1,215,387 + HP15_1183 0.31 +1.0 1,215,388 - HP15_1183 0.31 -0.5 1,215,494 - HP15_1183 0.35 +1.0 1,215,566 - HP15_1183 0.38 +0.0 1,215,869 - HP15_1183 0.50 -0.3 1,215,964 - HP15_1183 0.53 +0.7 1,216,030 - HP15_1183 0.56 +0.0 1,216,072 - HP15_1183 0.58 -0.4 1,216,082 - HP15_1183 0.58 -0.1 1,216,107 - HP15_1183 0.59 +1.1 1,216,172 + HP15_1183 0.61 -0.3 1,216,212 + HP15_1183 0.63 +0.0 1,216,255 + HP15_1183 0.65 +1.2 1,216,372 + HP15_1183 0.69 +0.6 1,216,372 + HP15_1183 0.69 +1.2 1,216,385 - HP15_1183 0.70 +0.6 1,216,388 + HP15_1183 0.70 -0.4 1,216,548 - HP15_1183 0.76 +0.4 1,216,617 + HP15_1183 0.79 -0.2 1,216,617 + HP15_1183 0.79 -0.1 1,216,617 + HP15_1183 0.79 +0.8 1,216,625 - HP15_1183 0.79 -0.2 1,216,633 + HP15_1183 0.79 -0.6 1,216,667 - HP15_1183 0.81 -0.8 1,216,667 - HP15_1183 0.81 +1.4 1,216,716 - HP15_1183 0.83 +1.0 1,216,724 + HP15_1183 0.83 -0.1 1,216,767 + HP15_1183 0.85 +1.1 1,216,774 + HP15_1183 0.85 +1.3 1,216,775 - HP15_1183 0.85 +0.9 1,216,932 + +1.3 1,216,949 - +1.1 1,217,095 - -0.4 1,217,116 - -0.1 1,217,120 + -0.4 1,217,828 - HP15_1184 0.39 +1.3 1,218,008 + HP15_1184 0.50 +0.1
Or see this region's nucleotide sequence