Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_979 and HP15_980 are separated by 256 nucleotides HP15_980 and HP15_981 overlap by 73 nucleotides HP15_981 and HP15_982 are separated by 140 nucleotides HP15_982 and HP15_983 are separated by 191 nucleotides HP15_983 and HP15_984 are separated by 94 nucleotides
HP15_979: HP15_979 - MOSC domain containing protein, at 988,583 to 989,380
_979
HP15_980: HP15_980 - hypothetical protein, at 989,637 to 990,023
_980
HP15_981: HP15_981 - conserved hypothetical protein, at 989,951 to 990,163
_981
HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279
_982
HP15_983: HP15_983 - glyoxalase family protein, at 993,471 to 993,974
_983
HP15_984: HP15_984 - transcriptional regulator, LysR family protein, at 994,069 to 994,938
_984
Position (kb) 990
991
992
993
994 Strain fitness (log2 ratio) -2
-1
0
1
2 at 989.389 kb on - strand at 989.399 kb on - strand at 989.415 kb on + strand at 989.553 kb on - strand at 989.580 kb on - strand at 989.649 kb on - strand at 989.663 kb on + strand at 989.830 kb on - strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.929 kb on + strand, within HP15_980 at 989.959 kb on + strand at 990.009 kb on - strand at 990.018 kb on + strand at 990.097 kb on + strand, within HP15_981 at 990.097 kb on + strand, within HP15_981 at 990.105 kb on - strand, within HP15_981 at 990.211 kb on + strand at 990.229 kb on - strand at 990.229 kb on - strand at 990.399 kb on - strand at 990.458 kb on - strand at 990.474 kb on - strand at 990.474 kb on - strand at 990.474 kb on - strand at 990.488 kb on - strand at 990.501 kb on - strand at 990.626 kb on - strand, within HP15_982 at 990.726 kb on + strand, within HP15_982 at 990.726 kb on + strand, within HP15_982 at 990.734 kb on - strand, within HP15_982 at 990.815 kb on + strand, within HP15_982 at 990.829 kb on + strand, within HP15_982 at 990.829 kb on + strand, within HP15_982 at 990.864 kb on + strand, within HP15_982 at 990.864 kb on + strand, within HP15_982 at 991.047 kb on - strand, within HP15_982 at 991.054 kb on - strand, within HP15_982 at 991.054 kb on - strand, within HP15_982 at 991.111 kb on - strand, within HP15_982 at 991.119 kb on + strand, within HP15_982 at 991.140 kb on - strand, within HP15_982 at 991.140 kb on - strand, within HP15_982 at 991.154 kb on - strand, within HP15_982 at 991.187 kb on + strand, within HP15_982 at 991.200 kb on - strand, within HP15_982 at 991.216 kb on - strand, within HP15_982 at 991.328 kb on + strand, within HP15_982 at 991.407 kb on + strand, within HP15_982 at 991.468 kb on - strand, within HP15_982 at 991.503 kb on + strand, within HP15_982 at 991.526 kb on - strand, within HP15_982 at 991.528 kb on + strand, within HP15_982 at 991.584 kb on - strand, within HP15_982 at 991.743 kb on + strand, within HP15_982 at 991.762 kb on + strand, within HP15_982 at 991.767 kb on + strand, within HP15_982 at 991.812 kb on + strand, within HP15_982 at 991.921 kb on + strand, within HP15_982 at 991.939 kb on - strand, within HP15_982 at 991.943 kb on + strand, within HP15_982 at 992.086 kb on - strand, within HP15_982 at 992.101 kb on + strand, within HP15_982 at 992.109 kb on - strand, within HP15_982 at 992.129 kb on + strand, within HP15_982 at 992.266 kb on - strand, within HP15_982 at 992.273 kb on + strand, within HP15_982 at 992.424 kb on + strand, within HP15_982 at 992.438 kb on + strand, within HP15_982 at 992.573 kb on - strand, within HP15_982 at 992.615 kb on - strand, within HP15_982 at 992.704 kb on + strand, within HP15_982 at 992.707 kb on - strand, within HP15_982 at 992.764 kb on - strand, within HP15_982 at 992.876 kb on + strand, within HP15_982 at 992.884 kb on - strand, within HP15_982 at 993.022 kb on + strand at 993.092 kb on - strand at 993.128 kb on - strand at 993.177 kb on + strand at 993.177 kb on + strand at 993.220 kb on - strand at 993.242 kb on + strand at 993.250 kb on - strand at 993.254 kb on + strand at 993.490 kb on + strand at 993.540 kb on + strand, within HP15_983 at 993.766 kb on + strand, within HP15_983 at 993.792 kb on + strand, within HP15_983 at 993.792 kb on + strand, within HP15_983 at 993.800 kb on - strand, within HP15_983 at 993.800 kb on - strand, within HP15_983 at 993.800 kb on - strand, within HP15_983 at 993.807 kb on + strand, within HP15_983 at 993.815 kb on - strand, within HP15_983 at 993.820 kb on - strand, within HP15_983 at 993.820 kb on - strand, within HP15_983 at 993.891 kb on - strand, within HP15_983 at 993.891 kb on - strand, within HP15_983 at 993.895 kb on + strand, within HP15_983 at 993.914 kb on + strand, within HP15_983 at 993.959 kb on + strand at 993.978 kb on - strand at 993.980 kb on + strand at 993.985 kb on + strand at 993.985 kb on + strand at 993.993 kb on - strand at 994.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 989,389 - +1.9 989,399 - -0.0 989,415 + -0.2 989,553 - +0.5 989,580 - +1.2 989,649 - -0.3 989,663 + -0.3 989,830 - HP15_980 0.50 -0.3 989,852 + HP15_980 0.56 -0.4 989,852 + HP15_980 0.56 +1.4 989,860 - HP15_980 0.58 -0.3 989,860 - HP15_980 0.58 -0.5 989,929 + HP15_980 0.75 -0.7 989,959 + -0.1 990,009 - -0.1 990,018 + -0.7 990,097 + HP15_981 0.69 -0.4 990,097 + HP15_981 0.69 -1.7 990,105 - HP15_981 0.72 -0.6 990,211 + +1.0 990,229 - -1.4 990,229 - +0.4 990,399 - -0.7 990,458 - +1.2 990,474 - -0.8 990,474 - +0.8 990,474 - -0.4 990,488 - -1.0 990,501 - +1.2 990,626 - HP15_982 0.11 +1.3 990,726 + HP15_982 0.14 +1.4 990,726 + HP15_982 0.14 -0.6 990,734 - HP15_982 0.14 +0.2 990,815 + HP15_982 0.17 -0.6 990,829 + HP15_982 0.18 +0.1 990,829 + HP15_982 0.18 -0.1 990,864 + HP15_982 0.19 -0.6 990,864 + HP15_982 0.19 +0.4 991,047 - HP15_982 0.25 +0.1 991,054 - HP15_982 0.25 -0.2 991,054 - HP15_982 0.25 -0.3 991,111 - HP15_982 0.27 -1.6 991,119 + HP15_982 0.27 -0.6 991,140 - HP15_982 0.28 -0.2 991,140 - HP15_982 0.28 -0.6 991,154 - HP15_982 0.29 -1.6 991,187 + HP15_982 0.30 -0.6 991,200 - HP15_982 0.30 -0.6 991,216 - HP15_982 0.31 +0.6 991,328 + HP15_982 0.34 -0.3 991,407 + HP15_982 0.37 +0.2 991,468 - HP15_982 0.39 -0.4 991,503 + HP15_982 0.40 -0.5 991,526 - HP15_982 0.41 -0.1 991,528 + HP15_982 0.41 -0.6 991,584 - HP15_982 0.43 -1.0 991,743 + HP15_982 0.48 +0.9 991,762 + HP15_982 0.49 +1.5 991,767 + HP15_982 0.49 +0.7 991,812 + HP15_982 0.51 +0.8 991,921 + HP15_982 0.54 +0.2 991,939 - HP15_982 0.55 -0.2 991,943 + HP15_982 0.55 -0.1 992,086 - HP15_982 0.60 -2.7 992,101 + HP15_982 0.60 +1.0 992,109 - HP15_982 0.61 +0.1 992,129 + HP15_982 0.61 -0.5 992,266 - HP15_982 0.66 +1.3 992,273 + HP15_982 0.66 +1.2 992,424 + HP15_982 0.71 +0.2 992,438 + HP15_982 0.72 -0.8 992,573 - HP15_982 0.76 -0.6 992,615 - HP15_982 0.78 -0.8 992,704 + HP15_982 0.81 -0.1 992,707 - HP15_982 0.81 +0.4 992,764 - HP15_982 0.83 -0.4 992,876 + HP15_982 0.86 -0.7 992,884 - HP15_982 0.87 +0.0 993,022 + -0.8 993,092 - +1.3 993,128 - -0.1 993,177 + +0.2 993,177 + -0.1 993,220 - +0.7 993,242 + +0.6 993,250 - -0.6 993,254 + -0.2 993,490 + -0.6 993,540 + HP15_983 0.14 +1.0 993,766 + HP15_983 0.59 -0.3 993,792 + HP15_983 0.64 +1.4 993,792 + HP15_983 0.64 -0.4 993,800 - HP15_983 0.65 -0.0 993,800 - HP15_983 0.65 -1.2 993,800 - HP15_983 0.65 +0.9 993,807 + HP15_983 0.67 -1.2 993,815 - HP15_983 0.68 +1.2 993,820 - HP15_983 0.69 -0.2 993,820 - HP15_983 0.69 -0.3 993,891 - HP15_983 0.83 +1.3 993,891 - HP15_983 0.83 +0.9 993,895 + HP15_983 0.84 -0.6 993,914 + HP15_983 0.88 -0.1 993,959 + -0.3 993,978 - +0.8 993,980 + +0.8 993,985 + +0.3 993,985 + -0.7 993,993 - -0.1 994,014 - +0.3
Or see this region's nucleotide sequence