Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0170 and SOA0171 are separated by 272 nucleotides SOA0171 and SOA0172 are separated by 0 nucleotides SOA0172 and SOA0173 are separated by 174 nucleotides
SOA0170: SOA0170 - ISSod9, DNA-invertase (NCBI ptt file), at 159,090 to 159,647
SOA0170
SOA0171: SOA0171 - hypothetical protein (NCBI ptt file), at 159,920 to 160,177
SOA0171
SOA0172: SOA0172 - site-specific recombinase, resolvase family (NCBI ptt file), at 160,178 to 160,804
SOA0172
SOA0173: SOA0173 - hypothetical protein (NCBI ptt file), at 160,979 to 161,245
SOA0173
Position (kb) 160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 159.687 kb on + strand at 159.699 kb on + strand at 159.700 kb on - strand at 159.700 kb on - strand at 159.709 kb on + strand at 159.709 kb on + strand at 159.709 kb on + strand at 159.709 kb on + strand at 159.778 kb on + strand at 159.778 kb on - strand at 159.783 kb on + strand at 159.791 kb on - strand at 159.791 kb on - strand at 159.813 kb on - strand at 159.840 kb on - strand at 160.098 kb on + strand, within SOA0171 at 160.106 kb on - strand, within SOA0171 at 160.106 kb on - strand, within SOA0171 at 160.125 kb on - strand, within SOA0171 at 160.126 kb on - strand, within SOA0171 at 160.175 kb on - strand at 160.242 kb on + strand, within SOA0172 at 160.291 kb on - strand, within SOA0172 at 160.322 kb on + strand, within SOA0172 at 160.322 kb on - strand, within SOA0172 at 160.383 kb on + strand, within SOA0172 at 160.451 kb on + strand, within SOA0172 at 160.451 kb on + strand, within SOA0172 at 160.459 kb on - strand, within SOA0172 at 160.467 kb on - strand, within SOA0172 at 160.564 kb on + strand, within SOA0172 at 160.564 kb on + strand, within SOA0172 at 160.564 kb on + strand, within SOA0172 at 160.572 kb on - strand, within SOA0172 at 160.572 kb on - strand, within SOA0172 at 160.572 kb on - strand, within SOA0172 at 160.574 kb on + strand, within SOA0172 at 160.582 kb on - strand, within SOA0172 at 161.002 kb on - strand at 161.063 kb on - strand, within SOA0173 at 161.119 kb on - strand, within SOA0173 at 161.325 kb on - strand at 161.345 kb on + strand at 161.400 kb on + strand at 161.408 kb on - strand at 161.408 kb on - strand at 161.446 kb on + strand at 161.446 kb on + strand at 161.446 kb on + strand at 161.454 kb on - strand at 161.454 kb on - strand at 161.458 kb on + strand at 161.489 kb on - strand at 161.514 kb on + strand at 161.526 kb on + strand at 161.534 kb on - strand at 161.561 kb on + strand at 161.561 kb on + strand at 161.561 kb on + strand at 161.561 kb on + strand at 161.561 kb on + strand at 161.564 kb on - strand at 161.569 kb on - strand at 161.569 kb on - strand at 161.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 159,687 + -1.2 159,699 + -1.0 159,700 - -1.3 159,700 - -0.6 159,709 + -0.4 159,709 + -1.1 159,709 + -1.0 159,709 + -1.0 159,778 + -1.3 159,778 - -0.3 159,783 + -0.7 159,791 - -2.0 159,791 - -0.1 159,813 - -0.3 159,840 - -1.1 160,098 + SOA0171 0.69 -1.1 160,106 - SOA0171 0.72 -1.6 160,106 - SOA0171 0.72 -0.8 160,125 - SOA0171 0.79 -1.6 160,126 - SOA0171 0.80 -1.0 160,175 - -1.5 160,242 + SOA0172 0.10 -0.8 160,291 - SOA0172 0.18 +0.7 160,322 + SOA0172 0.23 -1.3 160,322 - SOA0172 0.23 -0.3 160,383 + SOA0172 0.33 -2.0 160,451 + SOA0172 0.44 -2.0 160,451 + SOA0172 0.44 -0.6 160,459 - SOA0172 0.45 -1.0 160,467 - SOA0172 0.46 -1.6 160,564 + SOA0172 0.62 -1.2 160,564 + SOA0172 0.62 +0.2 160,564 + SOA0172 0.62 -1.7 160,572 - SOA0172 0.63 -0.3 160,572 - SOA0172 0.63 -0.6 160,572 - SOA0172 0.63 -0.9 160,574 + SOA0172 0.63 -0.9 160,582 - SOA0172 0.64 -1.1 161,002 - -0.9 161,063 - SOA0173 0.31 -3.3 161,119 - SOA0173 0.52 +1.0 161,325 - -0.5 161,345 + -1.2 161,400 + -1.0 161,408 - -1.0 161,408 - -0.8 161,446 + -1.1 161,446 + -0.6 161,446 + -0.5 161,454 - -0.5 161,454 - -0.3 161,458 + -0.9 161,489 - -0.7 161,514 + -1.1 161,526 + -1.4 161,534 - -1.1 161,561 + -1.1 161,561 + -1.5 161,561 + -1.8 161,561 + -1.1 161,561 + -3.7 161,564 - -2.1 161,569 - -1.5 161,569 - -2.5 161,569 - -0.8
Or see this region's nucleotide sequence