Strain Fitness in Shewanella oneidensis MR-1 around SO3797

Experiment: 5-Hydroxymethylfurfural 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 10 mM
3,947,767	-		SO3795	0.39	-0.2
3,947,767	-		SO3795	0.39	+0.2
3,947,782	-		SO3795	0.41	+0.5
3,947,806	-		SO3795	0.44	-0.4
3,947,819	+		SO3795	0.46	+0.1
3,947,820	-		SO3795	0.46	-1.3
3,947,827	+		SO3795	0.47	-0.7
3,947,827	-		SO3795	0.47	+0.5
3,947,835	-		SO3795	0.48	-0.9
3,947,836	-		SO3795	0.48	-0.3
3,947,837	-		SO3795	0.49	-1.2
3,947,837	-		SO3795	0.49	+0.8
3,947,842	-		SO3795	0.49	-1.5
3,947,842	-		SO3795	0.49	-0.3
3,947,857	-		SO3795	0.51	+0.7
3,947,874	+		SO3795	0.54	+0.6
3,947,874	+		SO3795	0.54	-0.1
3,947,875	+		SO3795	0.54	-0.8
3,947,882	-		SO3795	0.55	-0.4
3,947,884	+		SO3795	0.55	+0.4
3,947,884	+		SO3795	0.55	+0.0
3,947,891	+		SO3795	0.56	+0.4
3,947,891	+		SO3795	0.56	-0.8
3,947,917	-		SO3795	0.59	-0.3
3,947,917	-		SO3795	0.59	-1.1
3,947,947	+		SO3795	0.63	+0.7
3,947,979	+		SO3795	0.67	+0.3
3,947,986	-		SO3795	0.68	-0.7
3,947,993	+		SO3795	0.69	+0.1
3,948,001	-		SO3795	0.70	-0.2
3,948,068	+		SO3795	0.79	+0.7
3,948,068	-		SO3795	0.79	-0.2
3,948,070	+		SO3795	0.80	-0.4
3,948,070	+		SO3795	0.80	-1.2
3,948,070	+		SO3795	0.80	-0.3
3,948,076	-		SO3795	0.80	-0.4
3,948,078	-		SO3795	0.81	+0.0
3,948,078	-		SO3795	0.81	+0.0
3,948,078	-		SO3795	0.81	-0.6
3,948,087	+		SO3795	0.82	+0.1
3,948,120	+		SO3795	0.86	-0.1
3,948,120	+		SO3795	0.86	+0.6
3,948,120	-		SO3795	0.86	-0.9
3,948,128	-		SO3795	0.87	-1.0
3,948,129	-		SO3795	0.87	-0.2
3,948,145	-		SO3795	0.90	+0.8
3,948,210	-				-0.7
3,948,262	-				-0.2
3,948,284	+				+0.2
3,948,290	+		SO3796	0.11	-0.3
3,948,295	+		SO3796	0.12	+0.2
3,948,298	-		SO3796	0.13	-0.2
3,948,298	-		SO3796	0.13	+0.6
3,948,298	-		SO3796	0.13	+0.2
3,948,298	-		SO3796	0.13	-0.1
3,948,298	-		SO3796	0.13	-1.5
3,948,320	+		SO3796	0.19	+0.0
3,948,327	+		SO3796	0.21	+0.2
3,948,335	-		SO3796	0.23	+0.5
3,948,335	-		SO3796	0.23	-1.3
3,948,335	-		SO3796	0.23	-0.6
3,948,374	+		SO3796	0.33	-0.2
3,948,382	-		SO3796	0.35	-0.2
3,948,406	+		SO3796	0.42	-0.1
3,948,414	-		SO3796	0.44	+1.2
3,948,414	-		SO3796	0.44	-0.7
3,948,414	-		SO3796	0.44	-0.2
3,948,414	-		SO3796	0.44	+1.8
3,948,415	+		SO3796	0.44	-0.3
3,948,416	+		SO3796	0.45	+0.7
3,948,416	+		SO3796	0.45	-0.2
3,948,416	+		SO3796	0.45	-1.3
3,948,423	-		SO3796	0.46	+0.5
3,948,424	-		SO3796	0.47	+0.1
3,948,424	-		SO3796	0.47	+0.6
3,948,444	+		SO3796	0.52	+0.3
3,948,444	+		SO3796	0.52	-0.2
3,948,457	-		SO3796	0.55	+0.0
3,948,505	-		SO3796	0.68	-0.5
3,948,514	-		SO3796	0.71	+0.4
3,948,521	+		SO3796	0.73	-1.5
3,948,521	+		SO3796	0.73	+0.2
3,948,521	+		SO3796	0.73	+0.8
3,948,521	+		SO3796	0.73	-0.5
3,948,521	+		SO3796	0.73	-2.0
3,948,529	-		SO3796	0.75	+0.6
3,948,529	-		SO3796	0.75	+0.5
3,948,530	-		SO3796	0.75	+0.2
3,948,572	+		SO3796	0.86	-0.1
3,948,674	+				+0.1
3,948,674	+				+0.7
3,948,682	-				+1.1
3,948,733	-				+0.3
3,948,766	-				+0.7
3,948,814	-				-1.2
3,948,849	-				-0.9
3,948,872	+				+0.8
3,948,872	+				+0.3
3,948,880	-				-0.8
3,948,880	-				-1.2
3,948,880	-				-0.2
3,948,881	-				-0.5
3,948,884	-				-0.7
3,948,893	-				-0.2
3,948,893	-				+0.1
3,949,062	+		SO3797	0.15	-0.9
3,949,142	+		SO3797	0.20	-1.6
3,949,151	-		SO3797	0.20	+0.4
3,949,198	+		SO3797	0.23	-1.8
3,949,206	-		SO3797	0.23	+0.3
3,949,206	-		SO3797	0.23	-1.9
3,949,339	-		SO3797	0.30	-0.4
3,949,414	+		SO3797	0.34	-0.1
3,949,473	+		SO3797	0.37	+0.3
3,949,479	+		SO3797	0.37	-0.2
3,949,487	-		SO3797	0.38	-1.8
3,949,498	-		SO3797	0.38	+0.5
3,949,531	-		SO3797	0.40	-1.0
3,949,555	-		SO3797	0.41	+0.4
3,949,585	-		SO3797	0.43	+0.3
3,949,637	+		SO3797	0.45	-0.3
3,949,650	-		SO3797	0.46	-1.4
3,949,711	-		SO3797	0.49	+0.1
3,949,777	-		SO3797	0.53	+0.6
3,949,801	-		SO3797	0.54	-0.9
3,949,842	-		SO3797	0.56	+0.3
3,949,850	+		SO3797	0.57	-0.3
3,949,910	+		SO3797	0.60	-0.6
3,949,937	+		SO3797	0.61	-0.4
3,949,953	+		SO3797	0.62	-0.5
3,949,996	-		SO3797	0.64	+0.3
3,950,028	+		SO3797	0.66	-0.2
3,950,028	+		SO3797	0.66	-0.7
3,950,038	+		SO3797	0.66	-2.6
3,950,044	+		SO3797	0.67	-1.3
3,950,184	-		SO3797	0.74	+0.2
3,950,234	-		SO3797	0.77	+0.0
3,950,278	+		SO3797	0.79	+0.4
3,950,307	-		SO3797	0.80	+0.1
3,950,312	+		SO3797	0.81	-0.4
3,950,344	+		SO3797	0.82	-0.2
3,950,352	-		SO3797	0.83	+0.2
3,950,377	+		SO3797	0.84	-0.4
3,950,462	-		SO3797	0.89	-0.3
3,950,509	+				-1.7
3,950,517	-				-0.3
3,950,517	-				+1.3
3,950,657	-				+0.3
3,950,675	+				+0.0
3,950,698	-				+0.6
3,950,785	-				-0.4
3,950,817	+				+0.5
3,950,817	+				-0.0
3,950,817	+				-0.2
3,950,817	+				-0.3
3,950,817	+				+0.6
3,950,817	+				-0.6
3,950,817	+				+0.1
3,950,825	-				+0.4
3,950,825	-				+0.0
3,950,825	-				+0.9
3,950,825	-				+0.2
3,950,825	-				-0.5
3,950,825	-				-0.3
3,950,825	-				+0.3
3,950,825	-				-0.4
3,950,840	-				-0.2
3,950,906	+				+0.2
3,950,926	+				-0.2
3,951,004	+		SO_3798	0.20	-0.2
3,951,004	+		SO_3798	0.20	+0.3
3,951,004	+		SO_3798	0.20	+0.3
3,951,004	+		SO_3798	0.20	-0.4
3,951,012	-		SO_3798	0.21	-0.5
3,951,061	-		SO_3798	0.28	-0.6
3,951,289	+		SO_3798	0.62	-0.5
3,951,289	+		SO_3798	0.62	-0.1
3,951,289	+		SO_3798	0.62	-0.7
3,951,297	-		SO_3798	0.63	-0.2
3,951,297	-		SO_3798	0.63	+0.3
3,951,297	-		SO_3798	0.63	+0.4
3,951,325	-		SO_3798	0.67	-0.9
3,951,455	+		SO_3798	0.86	+0.6
3,951,463	-		SO_3798	0.88	+0.1
3,951,475	-		SO_3798	0.89	-0.1
3,951,477	+		SO_3798	0.90	-0.4
3,951,477	+		SO_3798	0.90	-0.1
3,951,477	+		SO_3798	0.90	-0.7
3,951,477	+		SO_3798	0.90	+0.7
3,951,480	+				-0.5
3,951,485	-				-0.3
3,951,485	-				-0.3
3,951,485	-				+0.1
3,951,485	-				+0.5
3,951,492	+				+0.3