Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_0739 and SO0740 are separated by 208 nucleotides SO0740 and ggt-1 are separated by 217 nucleotides
SO_0739: SO_0739 - no description, at 755,419 to 756,255
_0739
SO0740: SO0740 - melanin biosynthesis protein TyrA, putative (NCBI ptt file), at 756,464 to 757,399
SO0740
SO0741: ggt-1 - gamma-glutamyltranspeptidase (NCBI ptt file), at 757,617 to 759,254
ggt-1
Position (kb) 756
757
758 Strain fitness (log2 ratio) -2
-1
0
1 at 755.483 kb on - strand at 755.553 kb on - strand, within SO_0739 at 755.575 kb on - strand, within SO_0739 at 755.614 kb on - strand, within SO_0739 at 755.773 kb on - strand, within SO_0739 at 755.773 kb on - strand, within SO_0739 at 755.773 kb on - strand, within SO_0739 at 755.778 kb on - strand, within SO_0739 at 755.826 kb on - strand, within SO_0739 at 755.843 kb on + strand, within SO_0739 at 755.874 kb on + strand, within SO_0739 at 755.971 kb on - strand, within SO_0739 at 755.981 kb on - strand, within SO_0739 at 755.986 kb on + strand, within SO_0739 at 755.986 kb on + strand, within SO_0739 at 755.994 kb on - strand, within SO_0739 at 756.017 kb on + strand, within SO_0739 at 756.185 kb on - strand at 756.218 kb on - strand at 756.218 kb on - strand at 756.235 kb on + strand at 756.433 kb on - strand at 756.536 kb on - strand at 756.581 kb on + strand, within SO0740 at 756.638 kb on + strand, within SO0740 at 756.712 kb on + strand, within SO0740 at 756.743 kb on - strand, within SO0740 at 756.964 kb on + strand, within SO0740 at 756.967 kb on - strand, within SO0740 at 757.027 kb on - strand, within SO0740 at 757.122 kb on + strand, within SO0740 at 757.130 kb on - strand, within SO0740 at 757.157 kb on - strand, within SO0740 at 757.157 kb on - strand, within SO0740 at 757.157 kb on - strand, within SO0740 at 757.169 kb on + strand, within SO0740 at 757.176 kb on + strand, within SO0740 at 757.263 kb on - strand, within SO0740 at 757.281 kb on + strand, within SO0740 at 757.287 kb on - strand, within SO0740 at 757.361 kb on + strand at 757.370 kb on - strand at 757.471 kb on - strand at 757.588 kb on + strand at 757.924 kb on + strand, within ggt-1 at 757.934 kb on + strand, within ggt-1 at 757.934 kb on + strand, within ggt-1 at 757.952 kb on + strand, within ggt-1 at 757.960 kb on - strand, within ggt-1 at 757.962 kb on + strand, within ggt-1 at 757.969 kb on + strand, within ggt-1 at 758.035 kb on + strand, within ggt-1 at 758.084 kb on + strand, within ggt-1 at 758.091 kb on + strand, within ggt-1 at 758.121 kb on - strand, within ggt-1 at 758.183 kb on + strand, within ggt-1 at 758.189 kb on - strand, within ggt-1 at 758.189 kb on - strand, within ggt-1 at 758.272 kb on + strand, within ggt-1
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 755,483 - +0.5 755,553 - SO_0739 0.16 -0.4 755,575 - SO_0739 0.19 +0.6 755,614 - SO_0739 0.23 +0.4 755,773 - SO_0739 0.42 -0.1 755,773 - SO_0739 0.42 +1.4 755,773 - SO_0739 0.42 +0.1 755,778 - SO_0739 0.43 -0.1 755,826 - SO_0739 0.49 -2.5 755,843 + SO_0739 0.51 -0.1 755,874 + SO_0739 0.54 +0.5 755,971 - SO_0739 0.66 -0.6 755,981 - SO_0739 0.67 +0.5 755,986 + SO_0739 0.68 -0.0 755,986 + SO_0739 0.68 -0.7 755,994 - SO_0739 0.69 +0.5 756,017 + SO_0739 0.71 -1.0 756,185 - -0.3 756,218 - -1.2 756,218 - -0.2 756,235 + +0.2 756,433 - -0.6 756,536 - -2.3 756,581 + SO0740 0.12 -1.8 756,638 + SO0740 0.19 -0.4 756,712 + SO0740 0.26 +0.4 756,743 - SO0740 0.30 -0.3 756,964 + SO0740 0.53 -1.0 756,967 - SO0740 0.54 -2.0 757,027 - SO0740 0.60 -2.0 757,122 + SO0740 0.70 -0.5 757,130 - SO0740 0.71 +0.5 757,157 - SO0740 0.74 +0.2 757,157 - SO0740 0.74 +0.8 757,157 - SO0740 0.74 -0.6 757,169 + SO0740 0.75 -1.3 757,176 + SO0740 0.76 -0.2 757,263 - SO0740 0.85 -1.2 757,281 + SO0740 0.87 -1.5 757,287 - SO0740 0.88 -1.5 757,361 + +0.2 757,370 - -1.0 757,471 - -0.4 757,588 + -0.2 757,924 + ggt-1 SO0741 0.19 +0.3 757,934 + ggt-1 SO0741 0.19 +0.4 757,934 + ggt-1 SO0741 0.19 +0.2 757,952 + ggt-1 SO0741 0.20 +0.8 757,960 - ggt-1 SO0741 0.21 +0.5 757,962 + ggt-1 SO0741 0.21 -0.7 757,969 + ggt-1 SO0741 0.21 +0.8 758,035 + ggt-1 SO0741 0.26 -0.2 758,084 + ggt-1 SO0741 0.29 +0.2 758,091 + ggt-1 SO0741 0.29 -2.0 758,121 - ggt-1 SO0741 0.31 +0.5 758,183 + ggt-1 SO0741 0.35 +0.6 758,189 - ggt-1 SO0741 0.35 +0.2 758,189 - ggt-1 SO0741 0.35 -0.7 758,272 + ggt-1 SO0741 0.40 +0.1
Or see this region's nucleotide sequence