Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt groEL and SO0705 are separated by 354 nucleotides SO0705 and SO0706 are separated by 3 nucleotides
SO0704: groEL - chaperonin GroEL (NCBI ptt file), at 721,019 to 722,656
groEL
SO0705: SO0705 - transcriptional regulator, Cro/CI family (NCBI ptt file), at 723,011 to 723,304
SO0705
SO0706: SO0706 - conserved hypothetical protein (NCBI ptt file), at 723,308 to 724,609
SO0706
Position (kb) 723
724 Strain fitness (log2 ratio) -1
0
1
2 at 722.651 kb on + strand at 722.702 kb on + strand at 722.710 kb on - strand at 723.214 kb on - strand, within SO0705 at 723.307 kb on + strand at 723.325 kb on - strand at 723.330 kb on + strand at 723.386 kb on + strand at 723.386 kb on + strand at 723.386 kb on + strand at 723.391 kb on + strand at 723.563 kb on - strand, within SO0706 at 723.578 kb on - strand, within SO0706 at 723.601 kb on - strand, within SO0706 at 723.828 kb on - strand, within SO0706 at 723.901 kb on - strand, within SO0706 at 723.955 kb on + strand, within SO0706 at 723.960 kb on + strand, within SO0706 at 723.976 kb on - strand, within SO0706 at 724.004 kb on + strand, within SO0706 at 724.004 kb on + strand, within SO0706 at 724.012 kb on - strand, within SO0706 at 724.012 kb on - strand, within SO0706 at 724.030 kb on - strand, within SO0706 at 724.140 kb on - strand, within SO0706 at 724.153 kb on + strand, within SO0706 at 724.240 kb on - strand, within SO0706 at 724.266 kb on + strand, within SO0706 at 724.289 kb on + strand, within SO0706 at 724.297 kb on - strand, within SO0706 at 724.299 kb on + strand, within SO0706
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 722,651 + +0.9 722,702 + +0.3 722,710 - +0.0 723,214 - SO0705 0.69 -0.9 723,307 + -0.0 723,325 - -0.2 723,330 + -0.2 723,386 + -0.5 723,386 + -0.0 723,386 + -0.2 723,391 + +0.7 723,563 - SO0706 0.20 -0.6 723,578 - SO0706 0.21 -0.6 723,601 - SO0706 0.23 -0.2 723,828 - SO0706 0.40 +0.2 723,901 - SO0706 0.46 +0.3 723,955 + SO0706 0.50 -0.6 723,960 + SO0706 0.50 -0.6 723,976 - SO0706 0.51 +0.1 724,004 + SO0706 0.53 +0.7 724,004 + SO0706 0.53 -0.5 724,012 - SO0706 0.54 -0.7 724,012 - SO0706 0.54 +0.1 724,030 - SO0706 0.55 -0.2 724,140 - SO0706 0.64 -0.2 724,153 + SO0706 0.65 -0.6 724,240 - SO0706 0.72 +0.5 724,266 + SO0706 0.74 -0.3 724,289 + SO0706 0.75 +2.1 724,297 - SO0706 0.76 +0.1 724,299 + SO0706 0.76 -0.7
Or see this region's nucleotide sequence