Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09780 and PGA1_c09790 are separated by 385 nucleotides PGA1_c09790 and PGA1_c09800 are separated by 90 nucleotides
PGA1_c09780: PGA1_c09780 - aerobic cobaltochelatase subunit CobS, at 1,006,988 to 1,007,974
_c09780
PGA1_c09790: PGA1_c09790 - cold-shock DEAD box protein A, at 1,008,360 to 1,010,501
_c09790
PGA1_c09800: PGA1_c09800 - beta-lactamase Bla, at 1,010,592 to 1,011,485
_c09800
Position (kb)
1008
1009
1010
1011 Strain fitness (log2 ratio)
-1
0
1 at 1008.084 kb on - strand at 1008.089 kb on + strand at 1008.102 kb on + strand at 1008.262 kb on + strand at 1008.272 kb on + strand at 1008.278 kb on - strand at 1008.289 kb on + strand at 1008.344 kb on - strand at 1008.373 kb on - strand at 1008.467 kb on + strand at 1008.516 kb on - strand at 1008.526 kb on - strand at 1008.679 kb on - strand, within PGA1_c09790 at 1008.693 kb on + strand, within PGA1_c09790 at 1008.742 kb on + strand, within PGA1_c09790 at 1009.009 kb on - strand, within PGA1_c09790 at 1009.373 kb on - strand, within PGA1_c09790 at 1009.383 kb on - strand, within PGA1_c09790 at 1009.390 kb on + strand, within PGA1_c09790 at 1009.436 kb on + strand, within PGA1_c09790 at 1009.538 kb on + strand, within PGA1_c09790 at 1009.561 kb on - strand, within PGA1_c09790 at 1009.777 kb on + strand, within PGA1_c09790 at 1009.826 kb on + strand, within PGA1_c09790 at 1009.938 kb on - strand, within PGA1_c09790 at 1009.961 kb on + strand, within PGA1_c09790 at 1009.993 kb on + strand, within PGA1_c09790 at 1010.090 kb on + strand, within PGA1_c09790 at 1010.184 kb on + strand, within PGA1_c09790 at 1010.267 kb on - strand, within PGA1_c09790 at 1010.351 kb on + strand at 1010.351 kb on + strand at 1010.359 kb on - strand at 1010.640 kb on - strand at 1010.662 kb on + strand at 1010.753 kb on + strand, within PGA1_c09800 at 1010.770 kb on - strand, within PGA1_c09800 at 1010.823 kb on + strand, within PGA1_c09800 at 1010.881 kb on + strand, within PGA1_c09800 at 1010.947 kb on + strand, within PGA1_c09800 at 1010.984 kb on - strand, within PGA1_c09800 at 1011.088 kb on + strand, within PGA1_c09800 at 1011.125 kb on + strand, within PGA1_c09800 at 1011.133 kb on - strand, within PGA1_c09800 at 1011.133 kb on - strand, within PGA1_c09800 at 1011.142 kb on + strand, within PGA1_c09800 at 1011.177 kb on + strand, within PGA1_c09800 at 1011.177 kb on + strand, within PGA1_c09800 at 1011.223 kb on - strand, within PGA1_c09800 at 1011.225 kb on + strand, within PGA1_c09800 at 1011.248 kb on + strand, within PGA1_c09800 at 1011.258 kb on + strand, within PGA1_c09800 at 1011.279 kb on + strand, within PGA1_c09800 at 1011.371 kb on + strand, within PGA1_c09800 at 1011.406 kb on - strand at 1011.406 kb on - strand at 1011.406 kb on - strand at 1011.418 kb on + strand at 1011.436 kb on - strand at 1011.438 kb on + strand at 1011.489 kb on + strand at 1011.495 kb on - strand at 1011.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,008,084 - -0.1 1,008,089 + +1.1 1,008,102 + +0.0 1,008,262 + -1.5 1,008,272 + +0.2 1,008,278 - +0.5 1,008,289 + -0.3 1,008,344 - -0.0 1,008,373 - -0.5 1,008,467 + +0.6 1,008,516 - +0.4 1,008,526 - +0.5 1,008,679 - PGA1_c09790 0.15 +0.7 1,008,693 + PGA1_c09790 0.16 +0.0 1,008,742 + PGA1_c09790 0.18 +1.4 1,009,009 - PGA1_c09790 0.30 +0.7 1,009,373 - PGA1_c09790 0.47 -0.4 1,009,383 - PGA1_c09790 0.48 +0.1 1,009,390 + PGA1_c09790 0.48 +0.2 1,009,436 + PGA1_c09790 0.50 +0.4 1,009,538 + PGA1_c09790 0.55 -0.1 1,009,561 - PGA1_c09790 0.56 -1.2 1,009,777 + PGA1_c09790 0.66 +0.1 1,009,826 + PGA1_c09790 0.68 +0.3 1,009,938 - PGA1_c09790 0.74 +0.6 1,009,961 + PGA1_c09790 0.75 +0.6 1,009,993 + PGA1_c09790 0.76 +0.9 1,010,090 + PGA1_c09790 0.81 +0.3 1,010,184 + PGA1_c09790 0.85 +0.6 1,010,267 - PGA1_c09790 0.89 +0.5 1,010,351 + -0.4 1,010,351 + -0.1 1,010,359 - -0.2 1,010,640 - +0.1 1,010,662 + -0.0 1,010,753 + PGA1_c09800 0.18 -0.5 1,010,770 - PGA1_c09800 0.20 +0.4 1,010,823 + PGA1_c09800 0.26 -0.2 1,010,881 + PGA1_c09800 0.32 -0.2 1,010,947 + PGA1_c09800 0.40 -0.3 1,010,984 - PGA1_c09800 0.44 +0.4 1,011,088 + PGA1_c09800 0.55 -0.4 1,011,125 + PGA1_c09800 0.60 -0.1 1,011,133 - PGA1_c09800 0.61 -0.0 1,011,133 - PGA1_c09800 0.61 -0.9 1,011,142 + PGA1_c09800 0.62 +0.8 1,011,177 + PGA1_c09800 0.65 -0.8 1,011,177 + PGA1_c09800 0.65 -0.3 1,011,223 - PGA1_c09800 0.71 -0.6 1,011,225 + PGA1_c09800 0.71 -0.4 1,011,248 + PGA1_c09800 0.73 +0.3 1,011,258 + PGA1_c09800 0.74 -0.3 1,011,279 + PGA1_c09800 0.77 -0.3 1,011,371 + PGA1_c09800 0.87 -0.4 1,011,406 - -0.5 1,011,406 - -0.1 1,011,406 - -1.0 1,011,418 + -0.3 1,011,436 - -0.5 1,011,438 + -0.2 1,011,489 + -0.4 1,011,495 - -1.3 1,011,497 - +0.2
Or see this region's nucleotide sequence