Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09790

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09780 and PGA1_c09790 are separated by 385 nucleotidesPGA1_c09790 and PGA1_c09800 are separated by 90 nucleotides PGA1_c09780: PGA1_c09780 - aerobic cobaltochelatase subunit CobS, at 1,006,988 to 1,007,974 _c09780 PGA1_c09790: PGA1_c09790 - cold-shock DEAD box protein A, at 1,008,360 to 1,010,501 _c09790 PGA1_c09800: PGA1_c09800 - beta-lactamase Bla, at 1,010,592 to 1,011,485 _c09800 Position (kb) 1008 1009 1010 1011Strain fitness (log2 ratio) -1 0 1at 1008.084 kb on - strandat 1008.089 kb on + strandat 1008.102 kb on + strandat 1008.262 kb on + strandat 1008.272 kb on + strandat 1008.278 kb on - strandat 1008.289 kb on + strandat 1008.344 kb on - strandat 1008.373 kb on - strandat 1008.467 kb on + strandat 1008.516 kb on - strandat 1008.526 kb on - strandat 1008.679 kb on - strand, within PGA1_c09790at 1008.693 kb on + strand, within PGA1_c09790at 1008.742 kb on + strand, within PGA1_c09790at 1009.009 kb on - strand, within PGA1_c09790at 1009.373 kb on - strand, within PGA1_c09790at 1009.383 kb on - strand, within PGA1_c09790at 1009.390 kb on + strand, within PGA1_c09790at 1009.436 kb on + strand, within PGA1_c09790at 1009.538 kb on + strand, within PGA1_c09790at 1009.561 kb on - strand, within PGA1_c09790at 1009.777 kb on + strand, within PGA1_c09790at 1009.826 kb on + strand, within PGA1_c09790at 1009.938 kb on - strand, within PGA1_c09790at 1009.961 kb on + strand, within PGA1_c09790at 1009.993 kb on + strand, within PGA1_c09790at 1010.090 kb on + strand, within PGA1_c09790at 1010.184 kb on + strand, within PGA1_c09790at 1010.267 kb on - strand, within PGA1_c09790at 1010.351 kb on + strandat 1010.351 kb on + strandat 1010.359 kb on - strandat 1010.640 kb on - strandat 1010.662 kb on + strandat 1010.753 kb on + strand, within PGA1_c09800at 1010.770 kb on - strand, within PGA1_c09800at 1010.823 kb on + strand, within PGA1_c09800at 1010.881 kb on + strand, within PGA1_c09800at 1010.947 kb on + strand, within PGA1_c09800at 1010.984 kb on - strand, within PGA1_c09800at 1011.088 kb on + strand, within PGA1_c09800at 1011.125 kb on + strand, within PGA1_c09800at 1011.133 kb on - strand, within PGA1_c09800at 1011.133 kb on - strand, within PGA1_c09800at 1011.142 kb on + strand, within PGA1_c09800at 1011.177 kb on + strand, within PGA1_c09800at 1011.177 kb on + strand, within PGA1_c09800at 1011.223 kb on - strand, within PGA1_c09800at 1011.225 kb on + strand, within PGA1_c09800at 1011.248 kb on + strand, within PGA1_c09800at 1011.258 kb on + strand, within PGA1_c09800at 1011.279 kb on + strand, within PGA1_c09800at 1011.371 kb on + strand, within PGA1_c09800at 1011.406 kb on - strandat 1011.406 kb on - strandat 1011.406 kb on - strandat 1011.418 kb on + strandat 1011.436 kb on - strandat 1011.438 kb on + strandat 1011.489 kb on + strandat 1011.495 kb on - strandat 1011.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,008,084 - -0.1
1,008,089 + +1.1
1,008,102 + +0.0
1,008,262 + -1.5
1,008,272 + +0.2
1,008,278 - +0.5
1,008,289 + -0.3
1,008,344 - -0.0
1,008,373 - -0.5
1,008,467 + +0.6
1,008,516 - +0.4
1,008,526 - +0.5
1,008,679 - PGA1_c09790 0.15 +0.7
1,008,693 + PGA1_c09790 0.16 +0.0
1,008,742 + PGA1_c09790 0.18 +1.4
1,009,009 - PGA1_c09790 0.30 +0.7
1,009,373 - PGA1_c09790 0.47 -0.4
1,009,383 - PGA1_c09790 0.48 +0.1
1,009,390 + PGA1_c09790 0.48 +0.2
1,009,436 + PGA1_c09790 0.50 +0.4
1,009,538 + PGA1_c09790 0.55 -0.1
1,009,561 - PGA1_c09790 0.56 -1.2
1,009,777 + PGA1_c09790 0.66 +0.1
1,009,826 + PGA1_c09790 0.68 +0.3
1,009,938 - PGA1_c09790 0.74 +0.6
1,009,961 + PGA1_c09790 0.75 +0.6
1,009,993 + PGA1_c09790 0.76 +0.9
1,010,090 + PGA1_c09790 0.81 +0.3
1,010,184 + PGA1_c09790 0.85 +0.6
1,010,267 - PGA1_c09790 0.89 +0.5
1,010,351 + -0.4
1,010,351 + -0.1
1,010,359 - -0.2
1,010,640 - +0.1
1,010,662 + -0.0
1,010,753 + PGA1_c09800 0.18 -0.5
1,010,770 - PGA1_c09800 0.20 +0.4
1,010,823 + PGA1_c09800 0.26 -0.2
1,010,881 + PGA1_c09800 0.32 -0.2
1,010,947 + PGA1_c09800 0.40 -0.3
1,010,984 - PGA1_c09800 0.44 +0.4
1,011,088 + PGA1_c09800 0.55 -0.4
1,011,125 + PGA1_c09800 0.60 -0.1
1,011,133 - PGA1_c09800 0.61 -0.0
1,011,133 - PGA1_c09800 0.61 -0.9
1,011,142 + PGA1_c09800 0.62 +0.8
1,011,177 + PGA1_c09800 0.65 -0.8
1,011,177 + PGA1_c09800 0.65 -0.3
1,011,223 - PGA1_c09800 0.71 -0.6
1,011,225 + PGA1_c09800 0.71 -0.4
1,011,248 + PGA1_c09800 0.73 +0.3
1,011,258 + PGA1_c09800 0.74 -0.3
1,011,279 + PGA1_c09800 0.77 -0.3
1,011,371 + PGA1_c09800 0.87 -0.4
1,011,406 - -0.5
1,011,406 - -0.1
1,011,406 - -1.0
1,011,418 + -0.3
1,011,436 - -0.5
1,011,438 + -0.2
1,011,489 + -0.4
1,011,495 - -1.3
1,011,497 - +0.2

Or see this region's nucleotide sequence