Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0789 and Psest_0790 are separated by 68 nucleotides Psest_0790 and Psest_0791 are separated by 166 nucleotides Psest_0791 and Psest_0792 are separated by 275 nucleotides
Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734
_0789
Psest_0790: Psest_0790 - Uncharacterized protein conserved in bacteria, at 862,803 to 863,243
_0790
Psest_0791: Psest_0791 - Acyl-CoA dehydrogenases, at 863,410 to 864,660
_0791
Psest_0792: Psest_0792 - Regulator of nitric oxide reductase transcription, at 864,936 to 867,113
_0792
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 862.431 kb on + strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.619 kb on - strand, within Psest_0789 at 862.625 kb on + strand, within Psest_0789 at 862.626 kb on - strand, within Psest_0789 at 862.810 kb on - strand at 862.989 kb on + strand, within Psest_0790 at 863.083 kb on + strand, within Psest_0790 at 863.083 kb on + strand, within Psest_0790 at 863.084 kb on - strand, within Psest_0790 at 863.229 kb on + strand at 863.229 kb on + strand at 863.229 kb on + strand at 863.229 kb on + strand at 863.230 kb on - strand at 863.230 kb on - strand at 863.370 kb on + strand at 863.371 kb on - strand at 863.422 kb on + strand at 863.527 kb on + strand at 863.887 kb on + strand, within Psest_0791 at 863.888 kb on - strand, within Psest_0791 at 864.277 kb on + strand, within Psest_0791 at 864.277 kb on + strand, within Psest_0791 at 864.277 kb on + strand, within Psest_0791 at 864.277 kb on + strand, within Psest_0791 at 864.277 kb on + strand, within Psest_0791 at 864.277 kb on + strand, within Psest_0791 at 864.277 kb on + strand, within Psest_0791 at 864.278 kb on - strand, within Psest_0791 at 864.278 kb on - strand, within Psest_0791 at 864.289 kb on + strand, within Psest_0791 at 864.475 kb on + strand, within Psest_0791 at 864.475 kb on + strand, within Psest_0791 at 864.634 kb on + strand at 864.634 kb on + strand at 864.638 kb on + strand at 864.639 kb on - strand at 864.639 kb on - strand at 864.639 kb on - strand at 864.639 kb on - strand at 864.639 kb on - strand at 864.775 kb on + strand at 864.775 kb on + strand at 864.776 kb on - strand at 864.776 kb on - strand at 864.776 kb on - strand at 864.776 kb on - strand at 864.776 kb on - strand at 864.787 kb on + strand at 864.787 kb on + strand at 864.788 kb on - strand at 864.896 kb on + strand at 864.896 kb on + strand at 864.896 kb on + strand at 864.896 kb on + strand at 864.896 kb on + strand at 864.896 kb on + strand at 864.897 kb on - strand at 864.897 kb on - strand at 864.897 kb on - strand at 864.897 kb on - strand at 864.897 kb on - strand at 864.897 kb on - strand at 864.925 kb on + strand at 864.925 kb on + strand at 864.925 kb on + strand at 864.926 kb on - strand at 864.990 kb on - strand at 865.048 kb on - strand at 865.117 kb on - strand at 865.158 kb on + strand, within Psest_0792 at 865.197 kb on + strand, within Psest_0792 at 865.198 kb on - strand, within Psest_0792 at 865.260 kb on + strand, within Psest_0792 at 865.260 kb on + strand, within Psest_0792 at 865.260 kb on + strand, within Psest_0792 at 865.260 kb on + strand, within Psest_0792 at 865.261 kb on - strand, within Psest_0792 at 865.261 kb on - strand, within Psest_0792 at 865.261 kb on - strand, within Psest_0792 at 865.261 kb on - strand, within Psest_0792 at 865.261 kb on - strand, within Psest_0792 at 865.335 kb on + strand, within Psest_0792 at 865.335 kb on + strand, within Psest_0792 at 865.335 kb on + strand, within Psest_0792 at 865.335 kb on + strand, within Psest_0792 at 865.335 kb on + strand, within Psest_0792 at 865.335 kb on + strand, within Psest_0792 at 865.335 kb on + strand, within Psest_0792 at 865.336 kb on - strand, within Psest_0792
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 862,431 + Psest_0789 0.14 +0.9 862,432 - Psest_0789 0.14 -0.9 862,432 - Psest_0789 0.14 -0.1 862,618 + Psest_0789 0.67 +0.5 862,618 + Psest_0789 0.67 +1.0 862,618 + Psest_0789 0.67 -1.5 862,618 + Psest_0789 0.67 +0.7 862,618 + Psest_0789 0.67 +0.0 862,618 + Psest_0789 0.67 -0.7 862,619 - Psest_0789 0.67 -0.2 862,625 + Psest_0789 0.69 +0.0 862,626 - Psest_0789 0.69 -0.5 862,810 - -0.5 862,989 + Psest_0790 0.42 -2.1 863,083 + Psest_0790 0.63 +0.3 863,083 + Psest_0790 0.63 -0.3 863,084 - Psest_0790 0.64 +0.0 863,229 + -0.3 863,229 + +0.0 863,229 + +0.6 863,229 + +0.6 863,230 - +0.0 863,230 - +0.5 863,370 + +1.6 863,371 - +0.0 863,422 + +0.4 863,527 + -0.9 863,887 + Psest_0791 0.38 -0.3 863,888 - Psest_0791 0.38 +1.0 864,277 + Psest_0791 0.69 +0.6 864,277 + Psest_0791 0.69 +0.7 864,277 + Psest_0791 0.69 +1.0 864,277 + Psest_0791 0.69 -1.0 864,277 + Psest_0791 0.69 -0.5 864,277 + Psest_0791 0.69 +1.6 864,277 + Psest_0791 0.69 +0.2 864,278 - Psest_0791 0.69 +0.0 864,278 - Psest_0791 0.69 +2.6 864,289 + Psest_0791 0.70 +1.4 864,475 + Psest_0791 0.85 -0.2 864,475 + Psest_0791 0.85 +0.6 864,634 + +0.8 864,634 + -0.0 864,638 + -0.2 864,639 - +0.7 864,639 - -0.5 864,639 - +1.3 864,639 - +0.0 864,639 - +0.7 864,775 + +0.7 864,775 + +0.4 864,776 - -0.5 864,776 - +0.0 864,776 - +1.0 864,776 - -0.2 864,776 - +0.1 864,787 + +1.0 864,787 + +0.8 864,788 - +0.6 864,896 + -0.5 864,896 + +1.3 864,896 + -1.5 864,896 + +1.0 864,896 + +1.9 864,896 + +0.6 864,897 - -0.4 864,897 - -1.1 864,897 - -1.5 864,897 - -0.3 864,897 - +0.2 864,897 - +2.0 864,925 + +0.7 864,925 + +0.6 864,925 + +0.2 864,926 - +0.6 864,990 - +1.2 865,048 - -0.4 865,117 - +0.7 865,158 + Psest_0792 0.10 +0.0 865,197 + Psest_0792 0.12 +0.7 865,198 - Psest_0792 0.12 -0.7 865,260 + Psest_0792 0.15 +1.0 865,260 + Psest_0792 0.15 +0.5 865,260 + Psest_0792 0.15 +0.8 865,260 + Psest_0792 0.15 +2.0 865,261 - Psest_0792 0.15 -0.2 865,261 - Psest_0792 0.15 +1.0 865,261 - Psest_0792 0.15 +0.3 865,261 - Psest_0792 0.15 +0.7 865,261 - Psest_0792 0.15 -0.1 865,335 + Psest_0792 0.18 +0.3 865,335 + Psest_0792 0.18 +0.1 865,335 + Psest_0792 0.18 +3.0 865,335 + Psest_0792 0.18 -0.8 865,335 + Psest_0792 0.18 +0.7 865,335 + Psest_0792 0.18 -0.2 865,335 + Psest_0792 0.18 -0.1 865,336 - Psest_0792 0.18 -0.0
Or see this region's nucleotide sequence