Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00550 and PGA1_c00570 are separated by 4 nucleotides PGA1_c00570 and PGA1_c00590 are separated by 41 nucleotides PGA1_c00590 and PGA1_c00600 are separated by 57 nucleotides PGA1_c00600 and PGA1_c00610 are separated by 37 nucleotides
PGA1_c00550: PGA1_c00550 - putative cob(II)yrinic acid a,c-diamide reductase, at 58,650 to 59,291
_c00550
PGA1_c00570: PGA1_c00570 - 30S ribosomal protein S16, at 59,296 to 59,655
_c00570
PGA1_c00590: PGA1_c00590 - chorismate mutase, at 59,697 to 60,005
_c00590
PGA1_c00600: PGA1_c00600 - putative acetyltransferase, at 60,063 to 60,665
_c00600
PGA1_c00610: PGA1_c00610 - acetyltransferase, GNAT family, at 60,703 to 61,449
_c00610
Position (kb) 59
60
61 Strain fitness (log2 ratio) -1
0
1 at 58.830 kb on + strand, within PGA1_c00550 at 58.832 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.850 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.880 kb on + strand, within PGA1_c00550 at 58.908 kb on + strand, within PGA1_c00550 at 59.000 kb on + strand, within PGA1_c00550 at 59.010 kb on + strand, within PGA1_c00550 at 59.159 kb on + strand, within PGA1_c00550 at 59.190 kb on - strand, within PGA1_c00550 at 60.055 kb on - strand at 60.359 kb on - strand, within PGA1_c00600 at 60.481 kb on - strand, within PGA1_c00600 at 60.481 kb on - strand, within PGA1_c00600
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 58,830 + PGA1_c00550 0.28 +0.3 58,832 - PGA1_c00550 0.28 -0.5 58,837 - PGA1_c00550 0.29 +0.6 58,837 - PGA1_c00550 0.29 +0.2 58,850 + PGA1_c00550 0.31 +0.2 58,855 + PGA1_c00550 0.32 -1.5 58,855 + PGA1_c00550 0.32 +0.7 58,855 + PGA1_c00550 0.32 -0.4 58,863 - PGA1_c00550 0.33 +0.1 58,863 - PGA1_c00550 0.33 +0.2 58,863 - PGA1_c00550 0.33 -0.6 58,880 + PGA1_c00550 0.36 +0.2 58,908 + PGA1_c00550 0.40 +0.3 59,000 + PGA1_c00550 0.55 +0.5 59,010 + PGA1_c00550 0.56 -0.2 59,159 + PGA1_c00550 0.79 +1.1 59,190 - PGA1_c00550 0.84 +0.3 60,055 - +1.5 60,359 - PGA1_c00600 0.49 -0.0 60,481 - PGA1_c00600 0.69 +0.2 60,481 - PGA1_c00600 0.69 -0.2
Or see this region's nucleotide sequence